Special

HsaINT0106301 @ hg19

Intron Retention

Gene
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:7453]
Coordinates
chr13:25831334-25831983:-
Coord C1 exon
chr13:25831874-25831983
Coord A exon
chr13:25831460-25831873
Coord C2 exon
chr13:25831334-25831459
Length
414 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATA
5' ss Score
0.92
3' ss Seq
TATGTGATCTTTCTTTTCAGGCA
3' ss Score
11.17
Exon sequences
Seq C1 exon
TCAATGGCACTAAAGGGCTTTCTGTCAATGATTTCTACTCCGGTTTGGAGAGCTCGGGATGGCTTCGCCATATCAAAGCTGTTATGGATGCTGCAATCTTCTTGGCCAAA
Seq A exon
GTAATACTTTATCTTTCATATTTGGTCTTGGGGTCTATAATGATTGGGAAGGAGTAGATGTATTCTGTTGGGGGCTGGTATCTATTCATCAGATAACTTTTATTATTTTTTACCTCTTTAATGAGCTTCACTTTATTTTCAGCCTTAAAAATATCATGTAGCACTTAATGTAGAAACTTAAAAAGATGCTCCTAAATACTTTGAAGTGGCATTTTTTCTTTGTTTTTTTTTTGTTTGTTTGCTTGTGTTTTTGTTGTTACCATATTTTGTTGTGTATTTTGGAAATTATGCTGTGACATTATCATTGCAGGCATAGCACTTCCTTGTAACACAATACCTGCTAGTATGATTTTCAAGTAGAATTTATTGGTTTACCTTAAAGTACGCTAGAATGTATGTGATCTTTCTTTTCAG
Seq C2 exon
GCAATAACAGTTGAAAATGCAAGTGTGTTGGTGCATTGTTCCGATGGTTGGGATAGGACTTCCCAGGTTTGTTCCCTGGGTTCTCTTTTATTGGATTCCTACTACAGGACAATCAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505-MTMR6:NM_004685:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACTAAAGGGCTTTCTGT
R:
CATGAATCCTTTGATTGTCCTGT
Band lengths:
232-646
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development