BtaINT0096165 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101277541-101278573:+
Coord C1 exon
chrX:101277541-101277666
Coord A exon
chrX:101277667-101278514
Coord C2 exon
chrX:101278515-101278573
Length
848 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GCAAAGTTTTCTTTTTCTATAAA
3' ss Score
-3.36
Exon sequences
Seq C1 exon
GCAGTGAAGGTAGAAAAGACCAATGTCTTAGTCCATTGTTCTGATGGGTGGGACCGCACAGCACAAGTTTGCTCTGTGGCCAGCATCCTCCTAGATCCATTTTATAGGACATTCAAAGGACTCATG
Seq A exon
GTAAGAGAGCAGTGATTGGATTTTACCTTGCACAAGTGGGCGATTATGAATAGATCAAATATAACTCTCAACCAACTTGTTTTCTATAAGAAAGAGGTCTACAAAAACAGCTCTCGTTTTCAGTTTAGCTTCTTTCACTAAAGTATGCATTTACAGTCTACATACTTTCCATTGCACACTCAACATAGTTTCTTACCCATCAGAAGATAAGTTGGATATAATAGGCTGGTTGGTGTAAGGTAAAGGAAAGACTCAAAAAGTTAACAAAGTTTAATGGATGATTGTTAAATAAGCAAACTGATGGGCTCATCATCTTCAGTGTCAGCTGTCTTGATGTCAGACTGATGTTTGTTTTCTGGTGCTGAATCCAACACTTCTTACTTTGTCTTTCTATGAAACAGAACTTACAGTAGGAGTTTATCCTCATTTTTCTTTTGGAAATGCTTTATTTTTTTTTAATGGTTGAAATGCATTTATACCAAGATTTGTTCTTGGTACAAACTCAAATACTGCCTTTGGATTCCTGTTTCTTCATAGGTTGAATTTACTATATTTATCAAGATTTCGTTATGACTTATATAGCCTGCCACACATTATGTAAAAGCCAAAAAAAATGTGACACTGAGTACAAATCCAGAATGATTTCTCCTGAGAGCTTTGAAATTTGAAGATAGCCTTTACAGGTCTTTAAAGGAAATCTAAATTACTTATTTATCATGTAGGAAATTAAATTTATGATCATTCAACACAAATTTGTACAAAGTCCACTTCAGCAAAGTGTTTTGATACTTTATCGGTATGATTAATTAATTTTATGATTTTTCTAATGCAAAGTTTTCTTTTTCTAT
Seq C2 exon
AAAATAAAGATCCTGATAGAGAAGGAATGGATATCCATGGGCCACAAGTTCTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705:ENSBTAT00000050192:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(11.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAAGGTAGAAAAGACCA
R:
CTTTGGGAGAACTTGTGGCCC
Band lengths:
185-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]