DreINT0098778 @ danRer10
Intron Retention
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21529451-21532640:-
Coord C1 exon
chr5:21532515-21532640
Coord A exon
chr5:21529501-21532514
Coord C2 exon
chr5:21529451-21529500
Length
3014 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TGACTATTTTTTTATTACAGGTT
3' ss Score
10.02
Exon sequences
Seq C1 exon
GCTGTGTGTGAAGAGAGAGCGAGTGTATTAGTACACTGTTCCGATGGTTGGGACAGAACTGCTCAGGTTTGCTCTCTGGCTTGCTTACTGCTGGATCCATACTACAGAACTATTAAAGGCCTCATG
Seq A exon
GTAATTACACACTAACCTTTAACCTCTGCCCTCAACACAGGGGTCCTTTGATCTTTAAGCGTCCACTCACATTTATGTCTCTACAATAGGGAGGTCATGGCTTTGTTTACTATGAGGTTACTTATAACTATGAAGCTATATATTCATGTTTATTTTAATAAATCCTGTTTATATATATATATATAATTTTTTTTTCCCCACTATACACTACCCGACAAAAGTCTTGTTGTCAGTCCTAGTTGTAAGAGCATAACTTGACTTTTAGTTGATCATTTGAAAAAGTGGCAGAAGGCTGATTTTTCCGAAGAATCATCTGTTGAACTACATCCCAATCATCACAAACACTGTAGAAGACCGCAGTAGAACCAGCATAGACCCAAGATTATCATAGAAATCAGTCAAGTTTGGTGAAGGAAAAATCATGGTTTGGGGTTTCATTCAGTCTGTGGGCATGCGAGTGATCTGCAGAATGGATGGCAACATTAACAGCCTGAGGTATCAAGAAATTTGTGCTGCCCATTACATTACAAACCACAGGAGAGGGCAAACTCTTCAGCAGTAAACCGCTCCTTCTCATAATTCAGCCTCTACATCAAAGTTCCTGAAAGCAAAGAAGGTCAAGTTGCTCCAGGATTGGCCAGCCCAGTCGCCAGACATAAGAACATTATTGAGCATGTCTGGGGTAAGATGGAGGGAGGCATTGAAGATGAATCCACAGAGATGTATGGATGCAGTCCTCCAAGCTCATGGGAGTCATACACAACATCATCATCAACAACTAATCAAATAATTAAAAATCAAGGCATGATCATATTTTATTTTTGGAGAATACGCGTAATCTAGAGGCCTTTACCTTTAATATAAACCACTTCTGTGCTGATACCAAATGATCAATTAGAAGTCAAATTATTATTTGTTTCTAAAACTTGGATAGATATATATGATGTATCTATATACCATCAATTATAAATAGTTAATTCACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATTAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTAAATTTTTCCGATATTACCGAAGTCGCATGACTCGGTAAAACTATAGGTCTTCTGAGAAAATTTGCTCAGGCGAATAAAGCGAACGGGAGGTAGCTTAAACTACATTTCCCATAAGCCCAGGCGTGGCCATAATCCTTTGCGGTCTGTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGTAGCGGAGATGAAAAAAAGATGGAAATGATCGAACCTAAAGCGGGTGTTGTCGCCGCGCCAAACTGAATAGCAGTGTTGTCGCGCGCGTTCTGATCAGCTGTGTTGTCTCGCGCGTATTGTAAAGCGCCGAGGGGGGGTTGAGCGCGCATTCTCAAGAGCGGTGTTGTCTACTGAAGGGCTGGACGGAGGGTGTGTCGTGTCGCGGGGGCACTTTTGATCAATTTGGAAGGGCATTTTCTATCCAAGACTAAAAAGGGCATGTGCACTGCACAGGTTGAGCCCTATGTGTGCACGTGCCTGCAAGTTGGGGAATACGACTAATAGCAGTCATGGGGACTGCAGAAACACAGCACACTGTTCAGATTGATGCAGACATTGACTTGTACCGCAAAGAGATCTCTATCTCACTCATGGTTTGTCTTCTCAAGTGGGGGAAAGACAATGCACAATGTTGCCCACTGCTGTCAACATGGGCCAAGTCATATCTCTGTCCCAGAATCCTCAGTCCCAAATGAGAGGGTTTTTTTCTGTTGCAGGGGACATTGTAAATACCCAGAGATACCAGCTTTTACCAGATTATAGTTATATGATCATTTTCCTTTAAACCCATCTATATCTAAGTAAGTGAGTGAGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATAATTTTTTGTTATTAAAATTGAAGTTCCTGTTTCAAAGCTAACAGATAGATGACTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAGTATTTTCAAAAGTTTTTTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGTACCGTGAAATTCTGATACCGTTACATCCCTAATATATATATATATATATATATATATATATATATATATATAAATATATATATATATACACACAGACACACACACACACACACACACACACACACACACACACAACCAGAGATGTTCCAATATATTACTAGTTAAAACAACTTTTACATTTTTTGGTTTGATCAACAACAAAAAACAGCAATAATTTAACATTTCTGTTATTTTAAAATAAAATGTATTCCTGTGCTGCAATGCTACAATTTTCAGCTAACATCATCCCAGCTTTCAGTTGCACATAATTCTTCAGAAATCATTCTAATATTTGGAATTCAGGAGACATTTTAAAACTAATAAAAAAAAACTTTGTAAAACGCATGATTGCTGAATAGTGTTGTTAAAAATATAATACTAATCGACTGAATGAAAATTTGAGCGGTTTTATTCATGCTTTGCTGGTTGATAAATTATTCGGATGGATTAAAATTTCAATTTCTTTGGTCAGACTGTGATAATTATTTTAGAAAACTGCTTATTGGTAATGAAACAAAGTATTTATTAGTCATCTATTGCTCATTTTGTAAACATTTTCAGTGCCTTTTTGTAATTTCACTGCGGTTTTTTGTCCAATTGTATAAATTCATGTTAAACACTACTTTGAAACATTGTTTACAGCTTAAGAATATTAAATTAAAATCTGATGGTGAAAAATGTTTTTTCTGCTAATTTAAGAGGAGTTAAAAACAGACTGGTCAATTTACACCAGGAACACTAAAATAAGGGGTGGAATGTGAACACGACAGGAGGGTTAATAATTTGACTATTTTTTTATTACAG
Seq C2 exon
GTTTTAATAGAAAAAGAGTGGATTTCTTTTGGTCATAAATTCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592:ENSDART00000002938:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]