HsaINT0106328 @ hg19
Intron Retention
Gene
ENSG00000102043 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:16825]
Coordinates
chrX:63555959-63557273:-
Coord C1 exon
chrX:63557148-63557273
Coord A exon
chrX:63556009-63557147
Coord C2 exon
chrX:63555959-63556008
Length
1139 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTCTTTTCTATAAAATGAAGATC
3' ss Score
2.94
Exon sequences
Seq C1 exon
GCAGTGAAGGTAGAAAAGGCCAGTGTCTTAGTCCATTGTTCTGATGGATGGGACCGCACAGCACAAGTCTGCTCAGTGGCTAGCATCCTCCTAGATCCATTTTATAGGACATTCAAAGGACTCATG
Seq A exon
GTAAGAGAGCACGCTACTATATTTTACTTTGTGTAAGAGACAGATTGCGACAAAATAAAAAATAACTGTCAAACAATATTTTTTTTGCCAGAGTTAGCTCTAAGTCTACAAAAATAGCTTTTCCAATTTAGCTTCTTTTCATTAAATTTAGGTGTGTACTATCTGTATACTTTCTTTTGTATGTTCAACATACTTCTTACCTATCAGAAGGTAAGTTATATGTAGCAGACTACTGTACAGAGTAGGAAAAGCTCAAAAAGTTTGCAGAGCTTAATGGATGACTGTCAAATAGACTGTCCAAGGGGCTCATCATCTTTAACATGTCAGCTGTTTGAATGTCAGACTTATGATTGTTTTCTAATGCTGAATCTAAAGCCTCTTAGTTGATCTTTCTAAGAAACAGAACTCACCATAGTGGTTTATTCTCATTTCTTTGGAAAGCTTTTTTTTGTTTTGTTTTGTTTTTTTGTTTTGAAGTAGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTTGTGCCATAGCCTCCCAAGTAGCTGGGATTACAGATGTGCACCACCATGCTTGGCTAATTTTTGTATTTTTAGTAGTGACTGGGTTTACCACATTGGCCAGTCTGGTCTCAAACTCCTGGCCTCATGTGATCTGCCCTCCTCGGCCTCCCAAAATGCTGGGATTACAGGTGTAAGCCACCATGCCTGGCTAGAATTTTTTTTTTTTTTTTAATGGTTAAAAATGGTTTTGTTACTGGTATAAAGCTAAGAGCTGCCTTTGGATTTCTGTTTTTCAAAGTGTGAATTTAATATCGTGCTTATCAGGATTGCATTTAGTTATGGCTCAGTGGCTTGTCACACATGTGAAAGCCAAAGGAAATTTGACTCTGGATATGTCTGAGAGCATCTGAAATTTGAAGGCACCCTGTATAGGCTTATGAATGAAATCTAAGTTACTTACTTATTTATCATTTAGGAAATTAACTATTTTATGATCAGTTCAACTATTTCAGCAAAGTGTTTTGACATTCTTGTGTGTATGGTTAATTCATTTTATGATTTTCCTAATGCAAACACTTTCTTTTCTATAAAATGAAG
Seq C2 exon
ATCTTGATAGAGAAGGAATGGATATCCATGGGCCACAAGTTTTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102043-MTMR8:NM_017677:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)