BtaINT0096236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43386262-43387826:+
Coord C1 exon
chr16:43386262-43386384
Coord A exon
chr16:43386385-43387743
Coord C2 exon
chr16:43387744-43387826
Length
1359 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CATGTGCTTCTGTGTTCTAGGTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
ATGGCTCCAGACTATGACCACCTAACTCTGATGCAGAAGGTCGAGGTGTTTGAGCACGCCGTCAACAACACAGCTGGGGACGACCTGGCCAAACTGCTGTGGCTGAAGAGCCCCAGCTCCGAG
Seq A exon
GTATGGTGCTCCTGCCCCGCCAGCCTCCCCTCTGGTCAGAAAGGCTCGTTTGCTCCTGTGCGCCCGGTGGGTGTGTCCTGTAATGACTAGCTGTAGGTGATGGGTAGCTTTTAGAGCAGAAACCAAATGGCTGAGCCACATAGTCTAGCTGCAGTTAGTTTCATGTTTCAACCATTGCTTACAACAGTATTTTATTAAGGCTGTTAAATCTTTTTCATATATATTATTAATTTCCTATAGATCTGGTTTTTCAGTTTTGTTAATAGTATGTTTCTAGGTTTGAAGTTTTTATTTTGTTTTGGTTTTGATGTACATTTTTAAATGTTAGAAGTTAATAGATTTTTTTTAATCCTTTCTTTAAAGTTTCTTTGGCTTTATATTTAGAAAGGCTCTCTCCACCTCAAGATTTTCTTGTACTAATTATAAGATTTGTTTTTACATTTAAATCCTTAACCCAAGTTGGAATTTAAAGTTAGGGTATAGATTTTCTTTTTTTAAGGTGATAACCAACATGACAGTATTACCAGGAGCTTCCCAGGTGGTGCTAGTGGTAAAGAACCTGCCTGCCAAAGCAGGAGATGTAAGAGACACGTATTTGATCCCTGTGTTGGAAAGATCCCCTAGAGGAGGGCATGGCAACCCTCTCTAGTATTCTTGCCTGAAGAATCCCATAAACAGAGGAGCCTGGCAGGCTATAGTCCATGGGGTCGAAAAGAGTCGGACACTACTGGAGTGATTTAGCACACACACAGTATTACCAAATAATCCATCCTGTAACAGAGTCAACTTTTATTATATACTAAATTCTTATATGCCCTTGAATTTCTTTCTAGAATTTCCGTATCACTGATCTTTTCTGCCTATTTATCCTCAAGTATCCCACTGTTAATACAAGTCTTTTCTCACTAGTTATTTACATGTAATTTTTTTCCAGGTAAATTTTAGGATCATTTTGTCAAGATTCCCAAGAAAGTGCCAATGAACTTTTATTGAAACTACATTAAATGTATTAAATAATCTGGAAGGATATTACATCTTTTCAATCTTAAGTGGATAGCCTTAAATGGATATTTTCTTTCCTTTTTTTTTTCTTTTTGTTTTAAATGGATATTTTCATTTACTGTAGTCTTTATATTTCTAAACAAAGTTTAATTTACTTAGTCATCTAAGTTCTACACATTTCCAATTAAGTTTATTCTGAGCATTTTATTAATTTTATAATTATGAATGATTTTTGTTCCCTCATACATCCTAACTGGTTATTGTTGGACTGTAAGCAAACAACTGATTAGGATGTAATTTGTATTGAAAACCAGTTAGTTTTCAGAGCCTCGGTTCGCATGTGCTTCTGTGTTCTAG
Seq C2 exon
GTGTGGTTTGATCGAAGAACCAATTATACCCGCTCTTTAGCGGTCATGTCTATGGTTGGGTATATTTTGGGCCTGGGCGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCCAGACTATGACCACC
R:
CTATCGCCCAGGCCCAAAATA
Band lengths:
206-1565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development