GgaINT0133944 @ galGal3
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4138820-4139289:-
Coord C1 exon
chr21:4139167-4139289
Coord A exon
chr21:4138903-4139166
Coord C2 exon
chr21:4138820-4138902
Length
264 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TATTCTGTCTCTGCTTGTAGGTA
3' ss Score
10.79
Exon sequences
Seq C1 exon
ATGGCTCCAGATTATGACCACCTGACTTTAATGCAGAAGGTAGAAGTATTTGAACATGCTGTCAATAACACAGCTGGTGATGACCTTGCCAAACTGCTGTGGTTGAAAAGTCCAAGCTCAGAG
Seq A exon
GTTAGTTCAGCACGTGTACTGTCTTCTCTGCAGAATGTGGGAGAAGTGGCTGTGCTTGCATATTACAAACTCCAAATGAATGTCTGCAGAAGGTGTTTTTTTCACAAACAAATAAAACTGTGCTGCTTCATGAAGATCTTTCCCTGTTTGGAAATTATTGATTTTGAGTGTTTTTCACATTCCAAAATATAGCAGTTATAAATTAAAATGTAAGCTGAAACATGCAACATGCCTGCCTGACTTCTATTCTGTCTCTGCTTGTAG
Seq C2 exon
GTATGGTTTGACAGAAGAACAAACTACACTCGTTCACTAGCTGTGATGTCAATGGTTGGGTACATTCTGGGTCTTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCAGATTATGACCACCT
R:
TGTCCCCAAGACCCAGAATGT
Band lengths:
204-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]