RnoINT0095485 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165362461-165364602:+
Coord C1 exon
chr5:165362461-165362583
Coord A exon
chr5:165362584-165364519
Coord C2 exon
chr5:165364520-165364602
Length
1936 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
CATGTGCTCTTGTGCTGTAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
ATGGCTCCTGACTATGACCACCTGACTCTGATGCAGAAGGTGGAGGTGTTTGAGCATGCTGTCAACAACACAGCCGGGGATGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCAGAG
Seq A exon
GTACGTCCACGGTCGCCGGTCGCAAACACCCACACACGGCTGGGCTGGGCGTACCCTCCGCTATGTTGTGATGAACTGAGAAGTTTTCACTGTGCTTCATAAAAAGCTTTTTAAAACCTCATTAAATTGAGGATGGTAGTTCATGCCTATATCCCAGCATTCGGGAGGCTGAGGCAGGAGGATCACCATGAACTCAAGTCCATCCTTTACTATATAAAGTTGTAAGACAGCCAGAACCATATATGAGATCCTGTAACTCCAGTTCCAGGGGAGTCAACATCCTTCTGGCCATCTCAGGCACTGGGCACACGTATGGTGCCCAGACATTCATAACGCGTACATGCATTCATACACATAAAAAATAATTTTTTTAAAATAAAATAAACCAGGCCAGAGAAATGATACCTTGGCAGGTTAGTTCGCTCAATGCCACACCTGACAGCTGAGTTCAGTCCTGGAACCCACATATTGGAAGGAAAGAACCAGTTCTGACCTTGGCTCGAACTCTGTAGTATGTACACCTGCCTCCCAGACACACACACACAAATAAGTAATATGATTTAAGAAAGTGCGTGTCTTAGTCAGGGTTCCTATTCCTGCACAAACATCATGGCCACGAAGCAAATTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACACAGGACAGGAATCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTTCCCCTGACTTGCTCAGCCTGCTCTCTTACAGAACCCAGGACCACCAGCCCAGGGACGGCACCACCCACCATGGGCTGGGCCCTCCCACCCTTGATCACTGAATGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCATTTCCTCAAGGGAAATTCTCTGTGACAACTCCAGCTTGTGTCAAGGTGACACACAAAACCAGCCAGTACAGTGTTTAATGATCAGCTACTACCTCACTGTTTACCAGAACATCCATCCTTCCCCCACCTTAAGAGACCGCACTTTGGGGGTTGGGGATTTAGCTCAGCAGAAGGCCCTGGATTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAGAGTCCGCACTTTGCTCACGCATTGAGCTCAGTCTTCCCATAGAACTTGCCTTAGAGCCATCTAATTGCTGTCTCTTATGTGTCTTGAAAACCAGCCATTAAGACAAGTCTCTTCACATGGTCTACTTTTTTTACATGGTGTGTGTATGTGTATATATATTAATTATACATCATACAGCTTTCTGCTTGCATATATGCCTGCAGGCCAGAAGATGATACCAGCTCTCTTTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCTTAGCCGCTGAGCCATCTGTCCAGCCCCCACATGGTCTACTTCTGTATTTTTTTTCTACCACATAAATTTGAGGACCATTGTATTGATGTCTGAAAAACAGGGCCATTGACGCTTTTTGGAATGATGTTACTGTACCAGATGACTTGGAAAGAAGGGTCCTCTTCACAGTCTCAAGTGGAGACCCTGAGTAGGACATCTTCACTTACATTCATGTTCCTCAGAAAAAGCTCGTTCATTATTCATCCAGGTGCAACCCTTTCTGATAGTTGATACTGAGGCATAGTTTATGATGATGATTGGGATCTTTGTCAGCTGACAAAACAGCTGACCTGGGCTATATAACTGTGCTCCATTCTAGCTGGTCAGTGGTAGAGAACAGCTGACCTGGGCTATAACTGTGCTCCATTCTAGCTGGTCAGTGGTAGAGAACAGCTGACCTGGGCTATTCTGTGCTGACGCTGCCGGCCTGTAGAACGTTGTCACATGTGCTCTTGTGCTGTAG
Seq C2 exon
GTGTGGTTTGACCGAAGAACCAATTATACTCGCTCCCTGGCTGTCATGTCCATGGTTGGATACATTTTAGGCCTTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCCTGACTATGACCACC
R:
CTGTCTCCAAGGCCTAAAATGT
Band lengths:
206-2142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]