BtaINT0096526 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51405197-51405691:-
Coord C1 exon
chr29:51405415-51405691
Coord A exon
chr29:51405312-51405414
Coord C2 exon
chr29:51405197-51405311
Length
103 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
AGCACTGGACTCTTGTCCAGGGA
3' ss Score
3.39
Exon sequences
Seq C1 exon
GCGCGCTCCCCACAGCCCTGAACGCGGCCCACGGCGGGCGGGTGTGCAGCACGTGGGGCGACTTCCACTACAAGACCTTCGATGGCGACGTCTTCCGCTTCCCCGGGCTGTGCAACTACATCTTCTCCGCGCACTGCGGCTCCGCCTACGAGGACTTCAACCTGCAGCTCCGCCGCGGCCTGCTGGGCTCCAGGCCTACCATCACCCACATCGTCCTCAGATCACAGGGGCTCGTGCTGGAGGTCTCCAACGGCTCGGTCCTCATCAACGGGTGGCG
Seq A exon
GTGAGCACAGCCGGGGCGTGGAGGGGCCCGGCTCCAAGGTGGGCGGGGGTCGGAGCAGGCGGGGAGGGGGCTGGACGCGTGGGAGCACTGGACTCTTGTCCAG
Seq C2 exon
GGAGGAGCTGCCCTACAGCCGCGCGGGACTCCTGGTGGAGCGGAGCAGCACCTACGTCAAGATCAACATCCGGCTGATGCTGACCTTCATGTGGAACGGAGAAGACAGCGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(53.1=82.8)
A:
NA
C2:
PF0009420=VWD=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCTGTGCAACTACATCTT
R:
GCCGGATGTTGATCTTGACGT
Band lengths:
248-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]