HsaINT1023966 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1161907-1162646:+
Coord C1 exon
chr11:1161907-1162168
Coord A exon
chr11:1162169-1162531
Coord C2 exon
chr11:1162532-1162646
Length
363 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
AGCCCTGCCTTCCTCCACAGGGT
3' ss Score
11.13
Exon sequences
Seq C1 exon
CCTCCAACCCGGCGCACAACGGGCGGGTGTGCAGCACCTGGGGCAGCTTCCACTACAAGACCTTCGACGGCGACGTCTTCCGCTTCCCCGGCCTCTGCAACTACGTGTTCTCCGAGCACTGCGGTGCCGCCTACGAGGATTTTAACATCCAGCTACGCCGCAGCCAGGAGTCAGCGGCCCCCACGCTGAGCAGGGTCCTCATGAAGGTGGATGGCGTGGTCATCCAGCTGACCAAGGGCTCCGTCCTGGTCAACGGCCACCC
Seq A exon
GTGAGTCTGGGTTCTGGGATGGTGGGGGCCACGCGGCGTGTGGGGTGGCATTTCCGGGTGGTTGCGGGGTTTCGCGGTCCTGGGAGGGATGTGGATTTCTCAGGAAGCCCCTGAGAGCAGAGCTGGACATGGGCCCTCCCTCGTCCCCCGAGTGGCCCACCTGCCCCTCCTGGGATCCCCAGGCTCTTATTCTGCCCCTTCCTAGCTCCTCGTGACCCCCGAGCTCCAGAGGTCAATGTCCCCATCCCAGACGCGACTTCACGGTCACGATGACCGTGTCACATTTGCGACCGCAGGCATCTGCCCTGCCTGGGGTCTCTCCTCACTGCGCTCCCAGCCCCTCAGCCCTGCCTTCCTCCACAG
Seq C2 exon
GGTCCTGCTGCCCTTCAGCCAGTCTGGGGTCCTCATTCAGCAGAGCAGCAGCTACACCAAGGTGGAGGCCAGGCTGGGCCTTGTCCTCATGTGGAACCACGATGACAGCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.7=87.5)
A:
NA
C2:
PF0009420=VWD=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCTGGGGCAGCTTC
R:
CAGGCTGTCATCGTGGTTCC
Band lengths:
342-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains