GgaINT0051511 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15994484-15996159:-
Coord C1 exon
chr5:15995904-15996159
Coord A exon
chr5:15994599-15995903
Coord C2 exon
chr5:15994484-15994598
Length
1305 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTGTACCCTGCAATTTCCAGGAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TCCAGGTCTCCACTGTTGGTAGGAGCGAGTGTACCACCTGGGGCAATTTCCACTTTCATACATTTGACCACGTTAAGTTCACTTTTCCCGGAACCTGCACATACGTCTTTGCTTCTCACTGCAATGACAGCTACCAGGACTTCAACATCAAAATCAGACGCAGTGACAAAAACAGTCACCTGATCTACTTCACTGTCACTACTGATGGAGTGATCTTAGAGGTGAAGGAAACAGGCATCACAGTGAATGGGAACCA
Seq A exon
GTAAGTAAAGATGCTACTGCTGCTTTCTAGCGTTGTGGCTTTATTGCTAGGTATTAGCAAGGGGTCATCTGTCTAAAAAGGTATCCTACTATGCAGAAAGCAAAGAGCTGTGTGTGTTATTAGCACATTGAACAGTGTATGGTGAAGAGTCCAGCCCATTGTGGTGGAGATGGCAAAAAGAACATAAATGACAGCTCCCAGAGGTTAACCACAACATGTTTAGAAAAGGCAATGTGTATGTAACAAAGCATAAGGTGTAGATTTCCTTGATGCTGCTTTGTTCAAAGGTAGGAGAGGGGAAAGATAAAATCAACACTTTAATTAGAAAATTGATTTTGTAGAAAATCTGTATTTTTTTTTTCCAAACATTATTTCTGTGATACTAACCTTAGCACTGTTTGTTGCTATTCAGGAACAGATCATCCTTTTAGAAAAAGTTTACCATTTCTAGACTGTGCAGAAATGGCCCTCCTTTGCAGATCACAGCTTGCTATGGGGTCTTCTACACAAGGGCAGAATTTCCAGAAATCAAAATTCACATCTTTAATTTCGATCTGAAATAAACCAGAAAGTGATCTGAAAATAAAATAAAATGGGCTGAGGCAGGTGTTGGCTCTGGGAAGAACCCTCACAATCTTGTTGGAGAGAAAATCACAAGCATTATGGACTGTCTTCTATTGATATCCATCCAGAAACAACCAAATACAGAACAACGTCGCTCAGATGTATCTCCTAAATCAAAGGGGGAAAAAGCTCACATGTTCTAGCCATTCTCTGATCTATTTTTCAGGCTTCAGGAAAGTAAGAAGTAATTGGCTTGGTAAGATAAAAAACTAACATGGGTCTGAGTCACGTCAATGCATTGGCAGTAAAACAGGCAAAAATATCACTGTAACTTCCAGGTGACAATGAAAAGCCTGCAGAGATTGTGAGAACCTGTGGTATCCTTAAATGGAGAGCAATATCCCAGTATTGGGATCTTGCTCCCTGTAACACTTTGAGTTAGATCCTCAATTCATATAAAGCAGAGAAGCTACTTTGGTATCAATAGAGTAGCTAATGTAATATTGACATGCTTGTGACCAAAATTGTATTGTGGGTTATTAGAATGTCACAGTAGACAAGGTTATCATACTAAAACTTAATGCATTAATGTGGATGCAGGCTGACCTCCATGGCTTATATGCCTCCTTTTGACTCTTATTCTTTTTTCCTGTATCTCTGGGAAGATTTGATTTTTTTTTTTTAACCATTATTTTGTTCTTTTTTCCCAATGTAATCTGTTTTGTACCCTGCAATTTCCAG
Seq C2 exon
GATCCCTCTGCCCTTCAGCTTGAAAAGCATCCTGATTGAGGACACCTGTGCATACTTCCAAGTCACCTCCAAGCTGGGTCTGACGCTCAAGTGGAACTGGGCTGACACTCTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.4=87.2)
A:
NA
C2:
PF0009420=VWD=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGAGCGAGTGTACCACCT
R:
GTCAGCCCAGTTCCACTTGAG
Band lengths:
344-1649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]