RnoINT0000873 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214727416-214728010:+
Coord C1 exon
chr1:214727416-214727648
Coord A exon
chr1:214727649-214727895
Coord C2 exon
chr1:214727896-214728010
Length
247 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ATCCCTACTCTCTTTTACAGGGT
3' ss Score
10.34
Exon sequences
Seq C1 exon
TGCAGCACATGGGGCAACTTCCACTACAAGACCTTTGATGGACAGGTCTTCTACTTCCCTGGTCTGTGCAACTATGTGTTCTCGGAACACTGTGGGGCTGCCTACGAGGACTTCAATATCCAGCTACGCCGTGGCCTGGAGTCTAATTCCACCACTCTGAGCAGGGTCATCATGAAGCTTGATGGCCTAGTTGTTGAGCTGACCAAGAGCTCCGTCTTAGTCAATAACCACCC
Seq A exon
GTGAGTCTGGGGCAGTATTGGATGGAGGTGCTTGGTGGTATCTCAGGGATGTGAGAGACATTGGCATTGTTAGCAAGACTCTACTCTGAGGAGCAAACCCCATACTAGAACTGCCTCTTAAACTCTTCCTTAATCCTGGCATTCCAGGTCCATGTCTCTGTCACACACATGACTGTAAGGATCTTCTCACCTGGGGTCTTTTTTGTCTCTGCGCCCCTCAGTACCTTATCCCTACTCTCTTTTACAG
Seq C2 exon
GGTCCAGCTGCCCTTCAGCCAGTCTGGGGTCCTCATTGAGCTCAGCAATGGCTACCTGAAGGTGGTGGCCAGGCTGGGGCTGGTCTTCATGTGGAATGATGATGACAGTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.4=98.7)
A:
NA
C2:
PF0009420=VWD=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGGTCTTCTACTTCCCTG
R:
ATTCCACATGAAGACCAGCCC
Band lengths:
292-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]