DreINT0005229 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8192896-8193341:+
Coord C1 exon
chr25:8192896-8193146
Coord A exon
chr25:8193147-8193226
Coord C2 exon
chr25:8193227-8193341
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
AATCCTTTTCCTTTATTTAGAGT
3' ss Score
8.42
Exon sequences
Seq C1 exon
AATCATGTCAACAGCATCTGCAGCATGTGGGGAAACTTCCACTTCAAGACCTTCGATGGGGACGTCTATCAATTCCCAGGGATGTGCGAGTACAACCTGGTGTCTGACTGCCAAAGCCTCATTCGACAGTTTTCGATTTACGTGAAGAGGACTGAACGCAGCACTGGCCCAAAGATCAGCAGGGTCTCCATAACCATCAACGACATCGCCATTGAGTTGACCGAGAACCAAGTCAACGTCAATGAAGCAAA
Seq A exon
GTAAGATTGTGTAGAACCAAAACGGCTGTGTGTAAAATAGATTGTTCAATGTTGAATTTAAATCCTTTTCCTTTATTTAG
Seq C2 exon
AGTGACGCTGCCCGTCCATGTGTCAGGAATCCTTGTGGAAGAAAACACAATTTACACCAGACTCTATTCCAAAATGGGCATCACTGTCATGTGGAACAAAGATGATGCAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.0=91.7)
A:
NA
C2:
PF0009420=VWD=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCCAAAGCCTCATTCGA
R:
GATTCCTGACACATGGACGGG
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]