Special

HsaINT1023993 @ hg38

Intron Retention

Gene
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1226615-1227145:+
Coord C1 exon
chr11:1226615-1226876
Coord A exon
chr11:1226877-1227030
Coord C2 exon
chr11:1227031-1227145
Length
154 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
AGACCCCGCTGTCTGCGCAGGGA
3' ss Score
7.07
Exon sequences
Seq C1 exon
CCCTGAACCCGGCGCACAATGGGCGGGTGTGCAGCACCTGGGGTGACTTCCACTACAAGACCTTCGACGGCGACGTCTTCCGCTTCCCTGGCCTTTGCAACTACGTGTTCTCTGAGCACTGCCGCGCCGCCTACGAGGACTTCAACGTCCAGCTACGCCGAGGCCTAGTGGGCTCCAGGCCTGTGGTCACCCGTGTTGTCATCAAGGCCCAGGGGCTGGTGCTGGAGGCGTCCAACGGCTCCGTCCTCATCAATGGGCAGCG
Seq A exon
GTGAGCCGGCCACCCTGGGGAGGGGCGAGGGCCGGGCCACACAGTGTGACCTCCCCACACGGCCATGTCTGACCTGGGCCAGGGCTGGGGGGGGGTTGGGTGGGCAGGCAGCCAGGAGAGCGGGGCCCAGGGAGAGACCCCGCTGTCTGCGCAG
Seq C2 exon
GGAGGAGCTGCCTTACAGCCGCACTGGCCTCCTGGTGGAGCAGAGCGGGGACTACATCAAGGTCAGCATCCGGCTGGTGCTGACATTCCTGTGGAACGGAGAGGACAGTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009420=VWD=PU(52.0=87.5)
A:
NA
C2:
PF0009420=VWD=FE(25.7=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGAGGACTTCAACGTC
R:
ACTGTCCTCTCCGTTCCACAG
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains