DreINT0099064 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8282072-8282897:+
Coord C1 exon
chr25:8282072-8282336
Coord A exon
chr25:8282337-8282782
Coord C2 exon
chr25:8282783-8282897
Length
446 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TATATATATATTTCTGACAGGGT
3' ss Score
6.71
Exon sequences
Seq C1 exon
TTGAACCCAACCCCGATCATCGGTCCACGATCTGCAGCACATGGGGAAATTTCCACTTCAAGACGTTCGATGGTCATTTCTTTCAACTGCCAGACACATGCAACTATGTTCTGGCGGTGATGTGTGATGCCGCATCATCCGATTTTAACATCCAGATGCAAAGGGAGACTGTAAATGGCTCGATCTCATTTAGCACAGTCTTAATAAAGCTGGACGGGACAGTCATCAAAGTCACCGACAGCGACATCACTATGGGTGAAGAAAC
Seq A exon
GTGAGTTCATTTGAGCACTACCCACCCCCTTGCACAAAAGTGTTATAAAATTGCGTATATAACATATATATAATATATATATACACACACACACACACACACATACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATATAAATTAATAAATAATAATAATTTTTTATGTATGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTAATAAATAATAATAATTTTGACTTTTTTTATATATATATTTCTGACAG
Seq C2 exon
GGTCACGGTTCCTACTTATAAGAATGGAATTAAAATTGAGGGAAGTCCAACCAGTTTCAAGATCTCCAACAAACATGGAGTGACTGTCTTTTGGGAGGAAGACAACTCTCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(53.1=86.5)
A:
NA
C2:
PF0009420=VWD=FE(26.0=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCAGCACATGGGGAAA
R:
ACAGAGAGTTGTCTTCCTCCCA
Band lengths:
350-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]