RnoINT0095740 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214781582-214782100:+
Coord C1 exon
chr1:214781582-214781843
Coord A exon
chr1:214781844-214781985
Coord C2 exon
chr1:214781986-214782100
Length
142 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GACCAGAACTTTCTGCACAGGGA
3' ss Score
4.07
Exon sequences
Seq C1 exon
CCTTACACCTGGCACACAACGGGAGAGTGTGCAGCACGTGGGGTGACTTCCATTATAAGACCTTCGATGGTGACGTGTTCCGCTTCCCTGGCCTCTGTAACTATGTCTTCTCTTCACACTGCGGGGCCACCTACGAGGACTTCAACATCCAATTACGTCGTGGTCTTGAGGGTTCCAGGCCCACGGTCACCTATGTGTTCCTCAGGGCCCAGGGACTGGTGATTGAGCTGTCTAATGGCTCTGTCCTGGTAAACGGACATCG
Seq A exon
GTGAGTTGGGCTGCATTCATTGTGGTCTTTAGACCTCAGTGTGTCCCCACTTGGTACTCTGGGGAGGGATCAGGATCAGAGTGGGTGGGGAGGACAGCCCTTGCCTATACCTGCTGAAGGAAGACCAGAACTTTCTGCACAG
Seq C2 exon
GGAGGAGCTGCCCTACAGCCGTGCAGGTCTTCTGATGGAGAAGACCAGTGGCTATGTGAAGATCAGCATCAGGCTAGTCCTCAACTTCCTGTGGAATGAAGAAGACAGTGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(52.0=87.5)
A:
NA
C2:
PF0009420=VWD=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGATGGTGACGTGTTCC
R:
AGCCACTGGTCTTCTCCATCA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]