Special

BtaINT0096534 @ bosTau6

Intron Retention

Gene
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51402391-51402788:-
Coord C1 exon
chr29:51402752-51402788
Coord A exon
chr29:51402502-51402751
Coord C2 exon
chr29:51402391-51402501
Length
250 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGGTGTCCTGCCCCATCAGGTA
3' ss Score
6.96
Exon sequences
Seq C1 exon
GACGTACACGAGAAAAAACAATTACGTCCTCACCAAG
Seq A exon
GTGAGCCCCGCCTGCTGGGCCTCCCGGGGCCCTTGGCCCCGCCTCTGCCCCAGGAAGGGTACCCCGATGGCCATCAGAGCGGTGAAGCCCCCGGGGTTCCATTCCCAGAAGAAGCTCACACTCGTGGGGCCCGGCGGTCCCGAGGTGACTGCGTGCGAGTTCCCCACCCCCGCAGGGACCTCCAGGGCATGGGGCTCCCTGCCCGGTGGGGGGCTGACCACCCAGCACGTGGGGTGTCCTGCCCCATCAG
Seq C2 exon
GTATGTGCAGACAGCGCGCTCACTGTGCTGGCCGAGCTGCGGAAGTGCGGCCTGACCGACAACGAGAACTGCCTCAAAACAGTGACACTGAGCTTGAATGGAGGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009313=VWC=PD(14.0=61.5),PF0009420=VWD=FE(8.1=100)
A:
NA
C2:
PF0009420=VWD=FE(24.2=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACAATTACGTCCTCACCAAG
R:
TGTCCCCTCCATTCAAGCTCA
Band lengths:
132-382
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]