Special

MmuINT0102449 @ mm9

Intron Retention

Gene
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149031929-149032397:+
Coord C1 exon
chr7:149031929-149032067
Coord A exon
chr7:149032068-149032286
Coord C2 exon
chr7:149032287-149032397
Length
219 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
CACTTTGGGTTTCTTGACAGAAA
3' ss Score
7.12
Exon sequences
Seq C1 exon
CACCTGCTTCGGAGGACTGTGGAAGTGCAAAGACCTGCCATGCCCTGGCACCTGCTCTGTGCAAGGCGGGTCCCACATCTTTACCTTTGACGAGAAACTCTACAATGTGCATGGAGACTGCAGCTACATCCTGACCAAG
Seq A exon
GTGTGGGCATAATCTGGCCCATAGACATCTGCTAGGGTCCTGTTGGTGGTCAAGAGCAGGGGTAAAGGGCATGGTGAATCTCTGTGCTGACAAGGACATCCCAGACCCCATGACAAGCTGCCTATGGAAAACAGGGCTACCTGAGGATACATCTAGAGCCCCTCAAGGTCTTGAGGGGGGAATGCTACATCCAACCACACACTTTGGGTTTCTTGACAG
Seq C2 exon
AAATGTGCAGATAGTAGCTTCACTGTGCTGGTCGATCTTCGGAAGTGTGGAGTGACAGATACGGAGAACTGCCTCAAAGCAGTGACACTAAACCTCAATAGTGGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009313=VWC=PD(67.2=91.5),PF0009420=VWD=PU(18.1=59.6)
A:
NA
C2:
PF0009420=VWD=FE(23.2=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGAGGACTGTGGAAGTG
R:
CGTGTCCCCACTATTGAGGTT
Band lengths:
244-463
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types