RnoINT0095709 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214785290-214785749:+
Coord C1 exon
chr1:214785290-214785428
Coord A exon
chr1:214785429-214785638
Coord C2 exon
chr1:214785639-214785749
Length
210 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
CATTTTGGGTTTCTTGACAGAAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
CACCTGCTTCGGGGGACTGTGGCAGTGCCAGGACCTGCCGTGCCCCGGCACCTGCTCTGTGCAAGGCGGGTCCCACATCTCCACCTTTGATGAGAAACTCTACAATGTGCATGGAGACTGCAGCTACATCCTGACCAAG
Seq A exon
GTGTGGTCATAATCTGGTCCACAGATACCGACTAGGGTCCTGTCGATGGTCAGGAGCAGGGGTGAAGGCCATGGGATATTCCAGACCCCATGACAAGCTGCCTGTGGAAAACTGGGGTACCTGAGGATACTTGTAGAGTCCCTCCAGGTCTTGAGGGGTTGTGCAAAGGGAAATTCTCCATCCAATCACACATTTTGGGTTTCTTGACAG
Seq C2 exon
AAATGTGCAGATAGCAGCTTCACTGTGCTGGTGGATCTTCGGAAGTGTGGAATGACGGACACCGAGAACTGCCTCAAAGCAGTGACGCTGAGCCTCAATAGCGGGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(67.2=91.5),PF0009420=VWD=PU(18.1=59.6)
A:
NA
C2:
PF0009420=VWD=FE(23.2=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTTCGGGGGACTGT
R:
ATGTCCCCGCTATTGAGGCTC
Band lengths:
247-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]