DreINT0099033 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8288787-8289897:+
Coord C1 exon
chr25:8288787-8288925
Coord A exon
chr25:8288926-8289789
Coord C2 exon
chr25:8289790-8289897
Length
864 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
AATTATATTTGTTATTCCAGCAC
3' ss Score
5.35
Exon sequences
Seq C1 exon
TACATGTGATGCTGGACACTGGACCTGCACATACCTGGACTGTCCCGGCACATGCTCTGTTGTTGGAGGTTCTCATGTCACCACTTTTGATGGAAAGAGCTTCACCTTCAGCGGGAACTGCGACTACATCCTCACTAAG
Seq A exon
GTCTGTCAAGATACACCAGATGAGAGTATTTTTTAAAAATCATTTATTTATATATTGTTGTGTACGCCAAAACATGTTTACACGTTTCATCATCACCACATTGTGCATTTTGTATGTGCACAGATTGATTTTGCTCAGTTGCTTTTGTGCTATAAGTTTGTTCAGAAGCTGTCAATACTAAACCGGCGAGCTGAAACCCAGAGCTGATGTGGATTTGTGTGAGGGGATAAAAAGATAAATGCAAATCTCTTTTAAACAAGTACAAAGACATTGGTTGCACTTTATTTTACACTATGTATACTTATCTAACAAAGTACTAGGTTATTAAAGTCAGGTTAAGTTTACTGTTGATTATTCAGTTTATGTGATAAATATGACAAGTACATAGTATTTGTATGCATGTTTTATCTTCTCATACTGAGAAACAATGGCCTGGTTTAATGTTGGCACCTTGTGGACAAGAAAGGTATCCAAAAACAAGTCACAGCTGTGCATGTGCAAGCAAAGTAGTGTGTGTGCACTGTACTGATGACAACATTTGACATGACAGAAGATGTTTTCTGTTACGTGGTTTATATCAGGGTTGCCAAAAGTCGGTCCTGGAGGGCCAGTGTCCTGCAGAGTTTAGTTCCAACCCCAATTAGACACACCTGAACCAGCTAATAAAGCTCTACCGGGTATTTTAGAATCTTCCAGGCAGGTGTGTCGAAGGAAGTTGGAGCTAAACTATGCATGACACCGGCCCTCCAGGACTGAGTTTAAGCACCCCTGGTTTATATACTAATCAAAAGAGGCAATATAGAAATGTATGTATAATCATGAAATAAAACTTTGCAGGTACTTAAATTATATTTGTTATTCCAG
Seq C2 exon
CACTCTGCAGACAGTGACTTTGCCGTTGTGGGAAATCTGGCAAAGTGTGAAGCATCCCGAACAGACACCTGCTTACACTCAGTTACCCTTGTCATCTCTGGGACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF053758=Pacifastin_I=PD(59.4=40.4),PF0009420=VWD=PU(18.3=59.6)
A:
NA
C2:
PF0009420=VWD=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTGATGCTGGACACTGG
R:
AGTGGTCCCAGAGATGACAAGG
Band lengths:
246-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]