BtaINT0096566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51376196-51376856:-
Coord C1 exon
chr29:51376675-51376856
Coord A exon
chr29:51376411-51376674
Coord C2 exon
chr29:51376196-51376410
Length
264 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GGTGCTGTGCTGTCTCACAGGTG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGGACATTGTCTACAACAAGACAGATGGGGCGGGCTGCCCCTTCTTAGCCATCTGCAACCAGCGCTGTGACCTTGACCGCTTCCAGGGCGCCTGCACCACCTCCTCACCCCCAGGGACCTCAGCCTCTGTGCCCCCAACCACTCCACTTAGCGACTGTGATCGTACAATCCCTCCTCGAAAG
Seq A exon
GTGTGCCTTCCACCTCCACCATGACCTTCCAGGCCCTTCTGTGTGCATGGGGCCCGGGGCATCCATCAAGGTTGATGGCACACCCCCAGCCCTCAGTGGCCACTCCACGGGTTGCTCTGGCTGGAGGAAAGCACGCAGGGTCCAAGCCCAGCCAGGAGGCAGCGGCCGCCCTGCCCCAGGCAGGGGGTGGTTCCTGTGGCTGAGGTGGGGGCGGTGGGAAGGGGTCCTGCCATCCCACCCTGTGGGTGCTGTGCTGTCTCACAG
Seq C2 exon
GTGAACGAGTCCTGGTTCCTGGAGGACTGTACGGTGGCCCGCTGTGAAGGTGACAACCGTGTCACCCTGCTGGGGCCCCGGCCGATGAGCAGCATCACGTGCGTGAATGGGCATCTGCCCGTGAAGGTGCAGAACCAGAGCCATCGCTGTGACTACCACTACGAGTGCGAGTGTGAGCGCCGCCCTTGGTTCCGGGTCGGGGGAGGGCTGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCCATCTGCAACCAGC
R:
GTGGTAGTCACAGCGATGGC
Band lengths:
299-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]