MmuINT0102472 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149051394-149052048:+
Coord C1 exon
chr7:149051394-149051575
Coord A exon
chr7:149051576-149051879
Coord C2 exon
chr7:149051880-149052048
Length
304 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCGTATGTCTTCTCCCTCAGGTG
3' ss Score
11.21
Exon sequences
Seq C1 exon
GGGATATCATCTACAATAAGACTGATGGAGCTGGCTGCCAATTCTATGCCATCTGCAACCAGTATTGTGATGTTGACCGCTTCCAGGGTACCTGCCCCTCCTCTTCACCTCCAATGTCCTCTACCACTGTACCTTTGCCTCCCCTGCTTCCTGGCTGTGATAATGCTATCCCTCCCCGGCAG
Seq A exon
GTGAGTTTCCCTTCCCCCTCCAGCTCCCTCCAGGGTGGTGTGGTTTGGGGTTGTCAGGGACAACTACTTTGGGGTTAAGCCACGGCTAACTCTCAGCAGCACCCCAGCCCTGTGGCCTGTCTCAGTGACCTGCCTTCCAGTAGCTAGCTCCTTTTGAGAGGGGTGCACAGGCTCTGGGTTCTTGATCAGCAGACACTGGCTGCCTTCTGCCATTCAGAGCTGTGGGAACCTAGAGCTGCAGACAGGACAGGGCTTGAGTCTCCACACAAGCTCCAAGTAAACCCCCGTATGTCTTCTCCCTCAG
Seq C2 exon
GTGAATGAGTCTTGGACCCTGGAGAACTGCACAGTGGCCAGGTGCCAGGGCAACAATCAAATCATTCTCCTTGAGCCGGAGCCTGTGGACAATGTCACCTGTGCCAACCGTCACTTGCCTATCAAAGTGTGGGACCAGGAGCCTTGCCACTTCCACTACGAGTGTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAAGACTGATGGAGCTGGC
R:
CACTCGTAGTGGAAGTGGCAA
Band lengths:
334-638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: