BtaINT0096570 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51374011-51374511:-
Coord C1 exon
chr29:51374283-51374511
Coord A exon
chr29:51374193-51374282
Coord C2 exon
chr29:51374011-51374192
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CTGATGGGCCCTGCCTGCAGGGT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GCACCTGCACCAACAACCGCCGGGATGAATGTCGCCGGCCAGACGGCACCACGGCCCGCACCTGCCGGGACATGGCCCGGTCCTGGCTGGTCTCCAACAGCAGCGTGGAGGGCTGCGGGGTGCCCACCGGCCTGCCCCCAACCACCAGCCCCCTCTTGCCGGAAACCAGCACGCCCGCCATCCACCCGTCGTGCCCCCCAGAGCCCCTCTGCGAGCTGATGCTGAGCTC
Seq A exon
GTGAGTTCTCCACCTGGGTTGGGTGGTGGTGGTGGGGCGCCATCACCCTGAGGGGCCTCCGCTGCAGCCTCTGATGGGCCCTGCCTGCAG
Seq C2 exon
GGTCTTCGCCGGGTGCCACAGCCTCATCCCACCTGGCCCGTACTTCAACGCCTGTGTCAGTGACAGCTGCTGGCCCGGCCGTGGCCGCAAGGTGCTCTGCCAGAGCCTGGAGGCCTACGCAGAACTCTGCCGCTCCCGGGGCGTCTGCCCTGACTGGCGCAATGCCACTCACGGGCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.0=20.8),PF087426=C8=PU(17.3=16.9)
A:
NA
C2:
PF087426=C8=FE(81.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGCTGGTCTCCAACAG
R:
AGGTGGGATGAGGCTGTGG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]