MmuINT0102476 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149053482-149053978:+
Coord C1 exon
chr7:149053482-149053707
Coord A exon
chr7:149053708-149053799
Coord C2 exon
chr7:149053800-149053978
Length
92 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTGACCACTTACTGTCATAGGGT
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTACCTGCACAAACAGCCAGATAGACGACTGCCGCCGGCCTGATGGCACCATAGCTTCTGACTGCCAGGACATGGCCAAAGAATGGCTGGTGCCTGGGAACAGTAGCAGCAGCTGCTTAGCTCAGCCTAGCCCTCTCCCGAGCACCACTCCCCAGACCCCAGTGTCCAGCACACTGACCTCCACCCCATGCCCCTCTGCACCTCTCTGTGAGCTGATGCTGAGCCA
Seq A exon
GTGAGTTGGCCTTTGGGGTGGTGGGGCTGGGCAGTAGTTCCCTTGGCCAACCTCCCTGCTGAGCTCCCAGCCCTGACCACTTACTGTCATAG
Seq C2 exon
GGTCTTCGCAGAGTGCCACAGGCTCATCCCTCCAGATGCCTTCTTCAGAAGCTGTGTCAGTGACCACTGCAATGCCAATATTACTGACATGCTCTGTCAGAGCCTGGAGGCCTATGCAGCACTCTGCCGGGCCCAAGGTGTATGTACCAACTGGCGCAATGCCACTGGAGGCTTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.8=21.1),PF087426=C8=PU(17.6=17.1)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTCTCTGTGAGCTGAT
R:
TGGTACATACACCTTGGGCCC
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: