GgaINT0051543 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15966507-15967737:-
Coord C1 exon
chr5:15967545-15967737
Coord A exon
chr5:15966686-15967544
Coord C2 exon
chr5:15966507-15966685
Length
859 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGTTTTCTTCCTTTATAAAGGAA
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTACATGCACCAACCAGAAGTCTGATGATGCTAGGAAGAGGAATGGTGAGGTCACTGACTCCTTCAAAGAGATGGCATTGGATTGGAAAGCCCCGGTTTCTACCAACAGATACTGTAATCCAGGCATCTCAGAACCAGTTAAGATTGAAAATTATCAGCACTGTGAGCCTTCTGAGCTGTGTAAAATCATCTG
Seq A exon
GTAAGATAACTTATAAGGAGGCCACATAATAAGTCCACAAGATAATTTTGTGCTTAACCATATGACTTGGGTGAGTTGCTTACAGGACACAATGAAAATGTGAGTTCTAGCATACCTTGCAAAACTGAGCAGTGAACTGATGTGCAAATGTTCCCAAGTTTGGCAGGTGTTTCTCAGCTGTAGCAGCATCAGACCTCCCTTAACTGTGTGTGCCGCTTGGCACTCCCTCTGCCTGTGGTTTCTGGATAAGTTTAGCAGAAACTGGCTATCACTCAGCATCTATCTGAACGCTCTGGATGAAAAGGAATACAGTCAGAATATAGCAGGCAAATGTATATGTCTGTTTTTTAAATAATGTTTTTTAAAATAGGATTGCCAACCATGTTGATGTTACAATGTCAGTGTATAGAATTATGGTCATGAGCTGCTCAGAAGACTCTTCTTTGTACATGTCATTCCAATGTAAAATTGCTTTGTTTCAAAGCACTGTAAAGAATGGGAGGTAAAGCTCATTCTTAATTAAACTACAGAATCTTTAAGGTTAGAAAAGATCTCTAAGATCATCCGGTCCAACCATCCACCTACCACCAATATTGCTCACTGAGGCACGTTCCTCAGTGCCACATCTGCACAGTTCTTGAACTCCCCCAGGGATGATGACTCTACCACCTCCCCGGGCATCCCGTGCCAGTGCCCCACCACTCATGTGGGTGTATTGCCAATCACAGCAGCACTTTGTATTTTTGCCTTGATGCTTTCTCTGGGTGGAATTCAGTTCAGCTGTGAGTTGAATTCTAACCTAGGTAGCCCAAGGAAGTAAAATGCTATATCTGTTTCCTTGTTTTCTTCCTTTATAAAG
Seq C2 exon
GAACCTGACTGAGTGCCACCGTGTGGTCCCCCCGCAGCCCTACTATGAGGCATGCGTAGCCAGCAGATGCTCGCAGCAGCACCCCAGCACTGAGTGCCAGAGCATGCAGACATACGCAGCCTTGTGTGGGCTCCACGGGATCTGTGTGGACTGGAGGGGGCAGACGAATGGGCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.0=24.6),PF087426=C8=PU(15.3=16.9)
A:
NA
C2:
PF087426=C8=FE(83.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCACCAACCAGAAGTCTG
R:
CCTCCAGTCCACACAGATCCC
Band lengths:
348-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]