HsaINT1023962 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1195012-1196054:+
Coord C1 exon
chr11:1195012-1195279
Coord A exon
chr11:1195280-1195875
Coord C2 exon
chr11:1195876-1196054
Length
596 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CCTGCCCATCCCTCCCACAGGGT
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCACTTGCACCAACGACAGGAAGGATGAGTGCCGCACGCCTAGGGGGACGGTGGTCGCTTCCTGCTCCGAGATGTCCGGCCTCTGGAACGTGAGCATACCCGACCAGCCAGCCTGCCACCGGCCTCACCCGACGCCCACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACAGTTGGGTCTACCACGGTCGGGCCCACCACACCGCCTGCTCCGTGCCTGCCATCACCCATCTGCCAGCTGATTCTGAGCAA
Seq A exon
GTGAGACTTGGGTGCAAGGGAGGGAGGGTCAGTGTGGCCGCCCCACCTCCCACCCTTCCAAGGGCTGGAGGGGAAGAAGCGCATTTTCAGGGGGCTCCTGAGAGGAAACGAGAGCTGCTGGTACCACAGACCAAGGAGGGGTGGGTGTTGGGGAGAAGTGGGTGCCGGGGAGGGGTGGGCAGTGGGGAGGGGCGGGTGCCGGGAAGGGGTGGTTGTGGCTGGAATGCTGCCAAGGGGTCACCAGGGTTGGCCGGCTGGGCCGTCTCTGAGGCTCTCTGCTGGCTCAGGTGTATGGACGGGGGCATCGGTCACCACCCCCAGGCAGCTTCCAGGTTTGCAGGGCAGGGGCTGGGGGGGCCAGGAAGAAGAACTTGCAGAAATAAATGGATGATGCCATCTGGACCCCCACCCCCCGCCCCCAAGCACACAGAATGTGTGGAAGGAGCCCGTCCGGGGATACAGGAGGGCGGCCACACACCAGTGGCTGCTCTGGGACTCGCCTCGCCTGGAGACTGCCCTGAAGCCTGGGAGCCTGACGTGGAGCAGGCAGGTGGCCGGAGAGGCTGCACCCAGCACCCTGCCCATCCCTCCCACAG
Seq C2 exon
GGTCTTTGAGCCGTGCCACACTGTGATCCCCCCACTGCTGTTCTATGAGGGCTGCGTCTTTGACCGGTGCCACATGACGGACCTGGATGTGGTGTGCTCCAGCCTGGAGCTGTACGCGGCACTCTGTGCGTCCCACGACATCTGCATCGATTGGAGAGGCCGGACCGGCCACATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.0=17.8),PF087426=C8=PU(16.4=13.3)
A:
NA
C2:
PF087426=C8=FE(82.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCACCAACGACAGGAAG
R:
CACATCCAGGTCCGTCATGTG
Band lengths:
357-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains