DreINT0099057 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8310646-8311429:+
Coord C1 exon
chr25:8310646-8310829
Coord A exon
chr25:8310830-8311244
Coord C2 exon
chr25:8311245-8311429
Length
415 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
3' ss Seq
CTCTATTTGTTTTTTCACAGCAT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGGTCTGCGACAACAATCGTACAAATGACTGCAGACGCCCTGATGGACAAATCGACAAATCGTGTGAGAACATGGCACAGCTTTGGATGGTTCCCCCAGGATGCCAGCCTCCTAAACCTATACCCAAGCCTACACCTCCTCCAGTTATCTGCAACCCCAGTATTTGTGAATACATCAAGGGCGA
Seq A exon
GTAAGGAAATGCTAAACTTTTATATTATGTAATATTATTGCTGATTACTGCGATAACAATATATCTCGCAATGATACATTTCCCTAGAGAGATTGTAGATTTAGTACCATTTAAAAAAAAATATGTATATACTTAATAATCATACTAAAATAAGAAGGTATTAGATATTTTTCTGATTTATTTCAAACAAATTTGGGCAACAAAAAGGCTCTTACTTTAAAAACATTTTGACATTTAAACATAAATGACTGAAAAGTTAAAAGCACCTAAATATGTACATTTTCAGAATTTATTTACCCTCAAGCTGTTTTAAACCTATATGACTAAATAAGGGGAAAAGAGGGAAATCTTACCATTTTGGAACATCAAATGAGGTAAAGGAATTTTTTTCAATGCTCTATTTGTTTTTTCACAG
Seq C2 exon
CATGTTTAAGGAGTGCCATGATCATATTCCTTACGAAAGTTATTATGAGTCATGCAAATTTGATGTGTGCCGCATGGGAAATCGTTCAATTGGTTGCACCAGTCTTGAGGCGTATGCTGCATTATGTGGAAAAGAAGGCATCTGTGTGGATTGGAGAACCTCCGATGACCTTAAACAAACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.3=25.8),PF087426=C8=PU(14.9=17.7)
A:
NA
C2:
PF087426=C8=FE(83.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTGCGACAACAATCGTA
R:
TTCTCCAATCCACACAGATGCC
Band lengths:
342-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]