RnoINT0000855 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214686219-214687511:+
Coord C1 exon
chr1:214686219-214686435
Coord A exon
chr1:214686436-214687332
Coord C2 exon
chr1:214687333-214687511
Length
897 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATC
5' ss Score
4.28
3' ss Seq
ACCCATCTTCCCCTTCATAGCTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
GCACCTGCACCAACAATACTGCTGATGACTGTATCCTACCCAGTGGGGAGATCATTTCTAACTGTGAAGTTGCTGCTGATGAGTGGTTGGTGAATGACCCGTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACTAAGCGCCCAGCCATCACGACACCAGGACCTTTCCCTGAAAACTGCACTGTGTCTCCTGTCTGTCAGCTCATCATGGACAG
Seq A exon
GTGATCTGTGGGAAGTGGAGAAGTGAAGGCGAGAGGATAAGGGCAAGCCTAGGCTAATGAGATCCTGTCTCAAAAAACCAAACCAAACCCAACCCAACCCAACCCAACCCAACCCAACCCAAACCAACCCAACCCAAACCAACCCAACCCAAACCAAACCAATCCAACTCAACCCAACCCAACCCAACCCAACCCAAACCAACCCAACCCAAACCAAACCAATCCAACCCAACCCAACCCAGAGTCTCATGAGGTCTCATCTCTATGACCCCTGCTGTCTACCAAGTAGGCAAAGAGCAGCCCATGTGGGCCTGGAAGAGCCGAGGTTGTTACTGTGGATGGGTGTTGGGTCCCAGGGGTCCCAGGACTTGGCTTCTGCTTCCCCAGGCCATAGCCATTCTCTGACACCCCATACCACAACACCCTTCTTTGCTCTCAGACATTTCTCACCTCCTGGCTAGGTGCAGCCTCATTGAGCTGTAGATCAACTAACCAGAAGGCAGCATCTCAGGGAAGTAGGTTTGGGATTGGACACAGGTCAGGGACTTCTAAATCTGGTAGCCACAGGAGGGTGCTCCCTGTCCCTGAAGGTAGCGGGGTGAGGTCAAAGTTAGCTGAGTCTCTGCAAGGATTGTTTGAAGGGGACATCCTGGCAACTACTGACCATTGAGGTGTACATAGTGTATTTCTACATGTCCGATGAAACAGACAATGTCCTTCCTTTCCTAGAGGCCAGCCCTTCCTGTCTTCTGCAGCTGGTTATCATAGTGTATCTTGTCTTTGGCAGGTGCCTCTGAGCAGGCTCCAGTAGGGCGGGGATGGGGGACAGCTGGGAGATCATGTGGAGAGGCTTCAGTGTTGACCACAATGTGACCCGACCCATCTTCCCCTTCATAG
Seq C2 exon
CTTATTCTCCCAGTGCCACCCCTTCGTGCCTCCCAAGCACTACTACGAAGCTTGCCTGTTTGATAGCTGCTTTGTGGCTGGCTCTGGTATGGAGTGTGCCAGTGTACAGGCCTATGCTGCCCTCTGTGCTCAGGAAGGTGTCTGCATTGACTGGCGGAATCACACCCAGGGGGCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.1=21.9),PF087426=C8=PU(17.6=17.8)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCACCAACAATACTGCT
R:
AGACACCTTCCTGAGCACAGA
Band lengths:
358-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]