GgaINT0058513 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16017547-16018573:-
Coord C1 exon
chr5:16018369-16018573
Coord A exon
chr5:16017726-16018368
Coord C2 exon
chr5:16017547-16017725
Length
643 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATGTATGTTTCTGTTTTTAGTGT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCATTTGCAATAACAACACGGCAGATGACTGCAGGTTGCCAAATGGAAATATTGCAGAAAACTGTGAAACTATGGCAGATTACTGGCAAGTTGTTGATCCCTCCAAACCACAGTGTTCTCCAGGTCTAGTTCCTACAAAAGCACCTAGCACAACGACAGGAAAGCCTTGCAAAGAATCTTCCCTCTGTGAGCTTCTTTGGGGAAG
Seq A exon
GTAGGCATGCATTCTTCTGGTGTTTATAAGCATTTGATTTTCAAGTATGGTGACTATTTTGGGGTTCATTTCTCAATAAAATTGTTTCTAACTATTCTCCCATCTCTTGTAGCTCTGTGGGTTTCTTGGCTTTCTTCTGTTTCTTTTGCTGTCATGTCATCCTTTGCTGATAGATTTTACTCACAACCCTCTGGCTGTTACATTAGCCTTACATGTTGCTCTTACATTCTTTTGTGCTATCTGCCTTCCATTGTCCTACTCTCTGGTCTTTGCCCATGTTCTCTTAGCAGCAAAGAGAGACCAAATGAAAAAAATCTTAGTTTTTTGAACCTAGTGTCAGAATTAAAAAAGAAATTCAATTAAAATCTAGTTTGAAAAATAGCTAATGTCTACGCTTCATAATATTCATGTAGCTCCTAGAGTGAAAATATTGGTGTGTGGGTGTATTGTAGATGAGAGGGAATATTTTAAAATATGTTGGAAGGTTACAATCTAGTCAAATGCTCTTAGTGGAAATCTTTCAGTAATAATCCTTGTTCACATCTCCTGAAGTGTCACTTTTCCCACAATATAACATGCTTAGCACATTGGAGAAATTACGTGTAATTCAGTAACTAAGCATGATGTATGTTTCTGTTTTTAG
Seq C2 exon
TGTGTTTGAGAAGTGCCGTGAAGTTGTTAAGCCTGATAAGTACTATGCAGCTTGCGTTTTTGATAGTTGTACACTTCCCGACTTAGACCTGGAATGCTCAAGTCTGCAGATCTATGCAGCTATCTGTGCCGATCAAAATGTCTGCGTTGACTGGAGAAGTCATACCAATGGTGTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.1=23.2),PF087426=C8=PU(17.6=18.8)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGACTGCAGGTTGCCAA
R:
ACTTCTCCAGTCAACGCAGAC
Band lengths:
344-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]