MmuINT0102353 @ mm10
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:141747955-141749108:+
Coord C1 exon
chr7:141747955-141748171
Coord A exon
chr7:141748172-141748929
Coord C2 exon
chr7:141748930-141749108
Length
758 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ACCCATCTCTCCCTGCATAGCCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCACCTGCACCAACAATACTGCAGATGACTGTATCCTGCCCAGTGGGAAGATCATCTCTGACTGTGAAATTGCTGCTGACGAGTGGTTGGTGAATGACCCCTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACCAAGCGTCCGGCCACCACGACACCAGGGCTTTCGCTTAATAACTGCACTGTGTCTCCTGTCTGCCACCTCATCATGGACAG
Seq A exon
GTGACCTGTGGGAAGTGGAGAAGTAGAGGCAAGAGGATCAGGGCAAGCCTAGGCAAATGAAACACCGTCTAAAAAAAAAACCAAACCGAACCAAACCAAACCAAACCAAATCAGTTTTTTGAGGTCTTATCTCTACTGCCCCTGCTGTCTACTAAGTAGGCGAAGAGCAGCCTCTGTGTGGGTCTGGAAGATCTGAGGTTATGTCGCTGTGGATGGGTGTTGGGTCACAGGACTTGGATTCTGTCTCCCCAGGCCCTAACTATTCTCTGACACTCCATACCCCAGCATCCTTCTTTGCTCTCAGACATTTCTCACCTCCTGGCTAGGTGCAGGTTCACTGAGCTATAGATTAACTGACCAGAATGCAGCATCTCGGGAAGGCAGGTTTGGGATTGGACACAGGTCAGGGACTCCTAAATCTTGGAGCCACAGGAGGATGTCCCCTGTCCCTGGAGATGTTAGGGTGAGGTCAAAGCTAGGTGAGGCTCTGCTAGGATTGTTGGAAGGGAACATCCTGGCAACTAGTGACTATTGAGGTGTGCATTGTACATCTCTACATGTCTGACGAAACAGACACATGTCCTTCCTTTCTTAGAGGCCAGCCCTTCCTATCTTCTGCAGCTGTTAACCATAGTGTGTCTTTGGCAGTCGCCTCTGAATAGGCTCCAGTAGGGCGGCGGCAGGGGGGGGGGGCGCTGGGAGAGCATGTGGAGAGGCTTTGGTGCTGACCACAATGTGACCCATCTCTCCCTGCATAG
Seq C2 exon
CCTATTCTCCCAGTGCCACGCCTTCGTGCCTCCCAAGCACTACTATGAAGCTTGCCTGTTTGATAGCTGCTATGTGCCTGGCTCTAATATGGAGTGTGCCAGTGTACAGGCCTATGCCACCCTCTGTGCCAAGGAAGGTGTCTGCATTGACTGGCGGAACCACACCCAGGGAGTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515:ENSMUST00000187945:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.7=23.3),PF087426=C8=PU(16.2=16.4)
A:
NA
C2:
PF087426=C8=FE(89.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGACTGTATCCTGCCC
R:
GCCAGTCAATGCAGACACCTT
Band lengths:
352-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types