MmuINT0102353 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148933860-148935013:+
Coord C1 exon
chr7:148933860-148934076
Coord A exon
chr7:148934077-148934834
Coord C2 exon
chr7:148934835-148935013
Length
758 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ACCCATCTCTCCCTGCATAGCCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCACCTGCACCAACAATACTGCAGATGACTGTATCCTGCCCAGTGGGAAGATCATCTCTGACTGTGAAATTGCTGCTGACGAGTGGTTGGTGAATGACCCCTCCAAGCCACACTGTCCCCACAAAGGCCTCACCACCAAGCGTCCGGCCACCACGACACCAGGGCTTTCGCTTAATAACTGCACTGTGTCTCCTGTCTGCCACCTCATCATGGACAG
Seq A exon
GTGACCTGTGGGAAGTGGAGAAGTAGAGGCAAGAGGATCAGGGCAAGCCTAGGCAAATGAAACACCGTCTAAAAAAAAAACCAAACCGAACCAAACCAAACCAAACCAAATCAGTTTTTTGAGGTCTTATCTCTACTGCCCCTGCTGTCTACTAAGTAGGCGAAGAGCAGCCTCTGTGTGGGTCTGGAAGATCTGAGGTTATGTCGCTGTGGATGGGTGTTGGGTCACAGGACTTGGATTCTGTCTCCCCAGGCCCTAACTATTCTCTGACACTCCATACCCCAGCATCCTTCTTTGCTCTCAGACATTTCTCACCTCCTGGCTAGGTGCAGGTTCACTGAGCTATAGATTAACTGACCAGAATGCAGCATCTCGGGAAGGCAGGTTTGGGATTGGACACAGGTCAGGGACTCCTAAATCTTGGAGCCACAGGAGGATGTCCCCTGTCCCTGGAGATGTTAGGGTGAGGTCAAAGCTAGGTGAGGCTCTGCTAGGATTGTTGGAAGGGAACATCCTGGCAACTAGTGACTATTGAGGTGTGCATTGTACATCTCTACATGTCTGACGAAACAGACACATGTCCTTCCTTTCTTAGAGGCCAGCCCTTCCTATCTTCTGCAGCTGTTAACCATAGTGTGTCTTTGGCAGTCGCCTCTGAATAGGCTCCAGTAGGGCGGCGGCAGGGGGGGGGGGCGCTGGGAGAGCATGTGGAGAGGCTTTGGTGCTGACCACAATGTGACCCATCTCTCCCTGCATAG
Seq C2 exon
CCTATTCTCCCAGTGCCACGCCTTCGTGCCTCCCAAGCACTACTATGAAGCTTGCCTGTTTGATAGCTGCTATGTGCCTGGCTCTAATATGGAGTGTGCCAGTGTACAGGCCTATGCCACCCTCTGTGCCAAGGAAGGTGTCTGCATTGACTGGCGGAACCACACCCAGGGAGTCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.1=21.9),PF087426=C8=PU(17.6=17.8)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGACTGTATCCTGCCC
R:
GCCAGTCAATGCAGACACCTT
Band lengths:
352-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: