MmuINT0102428 @ mm10
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141813009-141813886:+
Coord C1 exon
chr7:141813009-141813210
Coord A exon
chr7:141813211-141813707
Coord C2 exon
chr7:141813708-141813886
Length
497 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TTGTCTCTGCCCACTCACAGTAC
3' ss Score
7.01
Exon sequences
Seq C1 exon
GCACTTGCACCAATGACAAAAAGGATGAGTGCCGCCTGCCTGGGGGTTCCATAGCCTCCTCTTGTTCTGAGATGTCCCTCCACTGGAAGGTGCCCAACCAGCCTTCCTGCCAAGGGCCTCCACCAACTCCAACTTCAGTGGTACCCAGGCCTTCACCTACTCCGTGCCCACCATCGCCACTCTGTGAGCTCATCCTAAGCAA
Seq A exon
GTAAGACTCCAGGAAGTGGGGTAGCCTTCCTGGCCCCATCTACCAAAAGCTAGTGGGTCATTAAAAGGCTCCTAAGAAAAATGAGACCTGCCTTGTTCCAGGCTCTGGGCACTGTCTCTATGGATTGCGTCAGACAGTTGTTGCTGGAATGCTATTGTAGGGCTGACTGTGGCTGGGTTGGATAATCTCTGAAGTCCTCCACCGGCCCCTCTCAGTGGTATGGGCATCAGTTACTGCCTGCACATGGGCAAAACCCAGGGTTCAGAATGAGGGAGCCTGAGGGGAGAGTGACATTGCAGGAAGCAATGCTCTGGCTGATACCTTTTCTGGCACACACAGAGGTGGGATGCCCTTGGGAGACAGCCTCATAGGTGCTGAGTCATTGCCCAGGACCTCGCCTCTAAGGGGATATCACAGATCTGGAAGCTGCCCTCTGGGTGGCAAGTTAACTTAGAATGGATGTATACACCACCACGGTTGTCTCTGCCCACTCACAG
Seq C2 exon
TACCTTCAAGCTCTGCCATGACGTCATCCCCCCGCTGCAGTTCTATCAAGGCTGCTTATTTGACTACTGCCACATGCTGGACCTGGAGGTTGTATGCTCAGGCCTAGAGCTCTATGCATCACTCTGTGCAGCCCAAGGCGTGTGCATTCCCTGGAGAAGCCAAACCAACAACACCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974:ENSMUST00000155534:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.0=23.5),PF087426=C8=PU(17.6=19.1)
A:
NA
C2:
PF087426=C8=FE(81.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGATGAGTGCCGCCTG
R:
CTTCTCCAGGGAATGCACACG
Band lengths:
344-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types