GgaINT0051543 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14253021-14254251:-
Coord C1 exon
chr5:14254059-14254251
Coord A exon
chr5:14253200-14254058
Coord C2 exon
chr5:14253021-14253199
Length
859 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGTTTTCTTCCTTTATAAAGGAA
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTACATGCACCAACCAGAAGTCTGATGATGCTAGGAAGAGGAATGGTGAGGTCACTGACTCCTTCAAAGAGATGGCATTGGATTGGAAAGCCCCGGTTTCTACCAACAGATACTGTAATCCAGGCATCTCAGAACCAGTTAAGATTGAAAATTATCAGCACTGTGAGCCTTCTGAGCTGTGTAAAATCATCTG
Seq A exon
GTAAGATAACTTATAAGGAGGCCACATAATAAGTCCACAAGATAATTTTGTGCTTAACCATATGACTTGGGTGAGTTGCTTACAGGACACAATGAAAATGTGAGTTCTAGCATACCTTGCAAAACTGAGCAGTGAACTGATGTGCAAATGTTCCCAAGTTTGGCAGGTGTTTCTCAGCTGTAGCAGCATCAGACCTCCCTTAACTGTGTGTGCCGCTTGGCACTCCCTCTGCCTGTGGTTTCTGGATAAGTTTAGCAGAAACTGGCTATCACTCAGCATCTATCTGAACGCTCTGGATGAAAAGGAATACAGTCAGAATATAGCAGGCAAATGTATATGTCTGTTTTTTAAATAATGTTTTTTAAAATAGGATTGCCAACCATGTTGATGTTACAATGTCAGTGTATAGAATTATGGTCATGAGCTGCTCAGAAGACTCTTCTTTGTACATGTCATTCCAATGTAAAATTGCTTTGTTTCAAAGCACTGTAAAGAATGGGAGGTAAAGCTCATTCTTAATTAAACTACAGAATCTTTAAGGTTAGAAAAGATCTCTAAGATCATCCGGTCCAACCATCCACCTACCACCAATATTGCTCACTGAGGCACGTTCCTCAGTGCCACATCTGCACAGTTCTTGAACTCCCCCAGGGATGATGACTCTACCACCTCCCCGGGCATCCCGTGCCAGTGCCCCACCACTCATGTGGGTGTATTGCCAATCACAGCAGCACTTTGTATTTTTGCCTTGATGCTTTCTCTGGGTGGAATTCAGTTCAGCTGTGAGTTGAATTCTAACCTAGGTAGCCCAAGGAAGTAAAATGCTATATCTGTTTCCTTGTTTTCTTCCTTTATAAAG
Seq C2 exon
GAACCTGACTGAGTGCCACCGTGTGGTCCCCCCGCAGCCCTACTATGAGGCATGCGTAGCCAGCAGATGCTCGCAGCAGCACCCCAGCACTGAGTGCCAGAGCATGCAGACATACGCAGCCTTGTGTGGGCTCCACGGGATCTGTGTGGACTGGAGGGGGCAGACGAATGGGCAGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.0=24.6),PF087426=C8=PU(15.3=16.9)
A:
NA
C2:
PF087426=C8=FE(83.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCACCAACCAGAAGTCTG
R:
CCTCCAGTCCACACAGATCCC
Band lengths:
348-1207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]