BtaINT0096579 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51371281-51371838:-
Coord C1 exon
chr29:51371722-51371838
Coord A exon
chr29:51371368-51371721
Coord C2 exon
chr29:51371281-51371367
Length
354 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACCACCCCTCTGCCCCAGGGC
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTTGGTGCGACCATCCCAGGGGTTACTCCGTGCCACACGTGCACCTGTTTGTCCATGGACAGTGAGGACCTGACTGTGCGGTGTGAGGAGGAGGCCTGTAATACCACCTGCCTCCAG
Seq A exon
GTGAGGCCAGGCTAGGCCCCTGGGGAGGCCCATCACCGGACCCTGGGCCCCCGGGAGGGCCTCCAGCTCAGCCTTCATGGAGGTTTTTCCGTCCCAAAAGGAGGGAGTGAAGCAGGAGGGTGGGGTATGGGGCTGTGGGCTGGAGGCGGACCTGTAGGCTGCTGGGATAGGGTTCTGGAGGGCCGAAGTGGAGAAGGTGCTGGGAGCAGGGCTGAAGCTAAGAGAGGACCCGGGGGCTGGGCAGGGGCATGCCTCACAGAGGAAAGGGGGTTCCAAGGAGGCTAGCCCTGGGCCCCAGGGTGGGTGGGAGAGCAGGAGGGCTAGGTGTGGGACGTGACCACCCCTCTGCCCCAG
Seq C2 exon
GGCTTTGAGTACTCCACGGTGGCCGGGCAGTGCTGTGGGGAGTGCGTGCAGACCGCCTGCCTCGCACCGGACGGTCAGCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(60.3=100)
A:
NA
C2:
PF0009313=VWC=PD(22.2=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCATCCCAGGGGTTA
R:
CTGGACCAGCTGACCGTCC
Band lengths:
198-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]