GgaINT0051551 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15961239-15962367:-
Coord C1 exon
chr5:15962245-15962367
Coord A exon
chr5:15961335-15962244
Coord C2 exon
chr5:15961239-15961334
Length
910 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGTGACCTTATTCCCACAGGGT
3' ss Score
8.28
Exon sequences
Seq C1 exon
CCTGGGGCAGTGGTGCCAAAAAGCTCTTGTGAAGACTGTGTGTGCACAGATGAGCAGGATGCTGTGACAGGAACCAACCGCATCCAATGCGTCCCAGTGAAATGCCAAACCACCTGCCAGCAG
Seq A exon
GTCAGTGCTGCACACAGCCCCCACCATCAACAATGGCTGTTGAGAGAGTGTACTGTAAAGCTGGGGCAGTACAAGTGCTGTCTTGCTGAAGGATAGCAGGGTATAATCTTTTGTTCAATTTTTGTACAGTCCTGTTAACAGTGCTGGCCATTTTTGCTCTAGCAAACTGAAGAAATTACCCTTGGAGGGATGCCCTGAAGATGAATGGCTGCAAAGCTACTAAGGAGAAGTCTTACTGCTGAAAGATGATGTTTATGCCATTTTGTTGGTGCTGTTTTTGGCTCAAAAATTAAGATCACTGAGAAACCGCGGGGCTGTTTGTGTGTTTCCAGACACTACTCAGTACTCATGAGTCGAGAGTCTGAACAAAAACCGCTCAATCTATTTCTGAACATAAGCAAAGAACGGTTCCTTCTTTCTCAACCACATAAGGCTAGTCTCCCTACCTATCCTAAAAACTGGATAAAACCATTATCCTTTGTCTTGAAGCCAGCCACACCCATGAAAAGACTGATGGATACCTAAAGCACAGGGAAGGAGATAACTAGTGCGTGATTTTCATGTGTTTGACAGTGACAACTGTGGTGAATAATCATATAATATCAAGCACCGGTGGTAGACTTTGCAAATAATCTTATGATGAATTAATTTATTTGTTCTAACTTGTGTGTTAGCAAAAAGAGGAGTAGCTGAAAACAAGGTCTACATGGTAAGTGAAGTGCTCGAGAGGTCACTATTGAAACCTGGAAATAAATTGCCAGCTTTAGTTGTCAGGCTTAAAGTGGTTCCAACAGCTTTCTAAAGGAAAACAGAGGTGGGCTCATTTCCCCTGCTATCTCCAGTGTGACTTTGATCCAAAGGTGTTTCATGAACAAGGTAACACAACTAAATGGTGACCTTATTCCCACAG
Seq C2 exon
GGTTTCCGCTACGTGGAAAAGGAGGGTCAGTGCTGCAGCCAGTGTCAGCAAGTGGCTTGTGTGGCAAACTTCCCATTTGGCAGTGTGACCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(61.5=100)
A:
NA
C2:
PF0009313=VWC=PD(21.5=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGTGCCAAAAAGCTCT
R:
GGTCACACTGCCAAATGGGAA
Band lengths:
207-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]