RnoINT0095747 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214808092-214808884:+
Coord C1 exon
chr1:214808092-214808205
Coord A exon
chr1:214808206-214808797
Coord C2 exon
chr1:214808798-214808884
Length
592 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCTCTCCTGTCCTCACAGGGC
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTCGGTGCAACCTTCCTAGGGGGTCCCTGCCAGATATGCACCTGCCTCTCTGTGGACAACCAAGAACCTAGAGTAGAGTGTAGGGAGACCCACTGCACCACCTCTTGTCCCCAG
Seq A exon
GTGAGCCTACGGCCCAGAAAACTCCCTGAGGGGCTACCCATGGCAGTCTCTCATTGAGAGGCCTCCAGTTCACCATCGCTTTGAGGACTTGTTTTTTTTTTTTTTTTTCCAATGGGAAAAGTAGGGAAGAGGTAAGGACCGGAGGACAGGACCTGCAGCTGCTGAGCTGATTAGAAATGGATCTAGTGTGGTCCCAGTAGACAAGTGGTTCTCAACCTGTGTGTTGCAAACCTTCTGAGGGTCAAATGACCTTTCACTGGGGTCACATATCAGACATTCTGTATACCAGATATTTATATTACGATTCATAAGAGTAGCAAAAATTACAGTTATGAAATAGCAATGAAGTAATTTTATGGTTGTGGGTCACCACACCATGAGGAGTTGTACTCAAAGGCTGTAATATTAGGAAGGTTGAGAACCACTTCATTAGACATAGAGAAGCAGGGTGAGCTAAGCTGCAAGTCCTGGGAACACAGCAAAGACATGACCTTTCCACGGTTCCTGTTAAGGAGGCCCAGAGCCCCTAGTGTGTCCTCGAGAGGGTGGCTGGGATGATTGAGAGACCTGACCACCTCTCCTGTCCTCACAG
Seq C2 exon
GGCTTTGAGTACACACTGGTGCCAGACCAGTGCTGCGGGAAGTGTGTACAGAATGCCTGCCTCACACCAGAGGGCCAGGTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(59.7=100)
A:
NA
C2:
PF0009313=VWC=PD(22.6=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTGCAACCTTCCTAGGG
R:
CTGTACCACCTGGCCCTCTG
Band lengths:
200-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]