HsaINT0106839 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1280172-1281072:+
Coord C1 exon
chr11:1280172-1280291
Coord A exon
chr11:1280292-1280985
Coord C2 exon
chr11:1280986-1281072
Length
694 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGCCCCTCATGTCCCCACAGGGC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTTGGTGCAACCTTCCCAGGCGCCCTTCCCTGCCACATGTGTACCTGCCTCTCTGGGGACACCCAGGACCCAACGGTGCAATGTCAGGAGGATGCCTGCAACAATACTACCTGTCCCCAG
Seq A exon
GTGAGACCCGAGGCACCTGCCCCCAGGTGAGCCCCCGAGGCACCTGCCCCCAAGTGAGACCCGAGGCACCTGCCCCCAGGTGAGACCTGAGTCACCCGCCCCCAGGTGAGCCCCCGAGGCACCTGCCCCCAGGTGAGTCCCTGAGGCACTTGCCCCCAAGTGAGACCCGAGGCACCTGCCCCCAGGTGAGACCCGAGGCACCTGCCCCCAGGTGAGACCTGAGTCACCTGCCCCCAGGTGAGCCACCAAGGCACCTGCCCCCAAGTGAGACCCGAGGCACCTGCCCCCAGGTGAGCCCACAGCTGCTGGGCAGACCCAGCCCTGAGTCACTTATCCTGGCTCCCTGGGGTTCTCTAGCTCAGCCATTGCTGGGGTCTTGTTTGTTTCCAAAGGGAGGGTATGAAGTAGGAGGATAACTGAGGGGGTCTGGGGGTGGGACAGGACCTGCAGGCTGCTGGGGACAGGGGCTGAGGTCAGGTTCCAGGAAGGCAGGGGTAGGCAGAGAGAAGGTGCTGGAAACTGGGGTGAGGCTGAGCCGGGATAACTGAGTGGGGGCAACTTCTTCGGGTATAGGCCCAGGCAGGGACAGGGCTAAGGGGTCCTGGACCACTGGGGTGTAGACAGGAGGGCAGGCTGGGCCGGGGCATGTGCTGGAGGAGAGGGTTAGGGCCTGACGCCCCTCATGTCCCCACAG
Seq C2 exon
GGCTTTGAGTACAAGAGAGTGGCCGGGCAGTGCTGTGGGGAGTGCGTCCAGACCGCCTGCCTCACGCCCGATGGCCAGCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(60.9=100)
A:
NA
C2:
PF0009313=VWC=PD(21.9=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAACCTTCCCAGGC
R:
GACTGGCTGGCCATCGGG
Band lengths:
201-895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)