BtaINT0096660 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003914 | MVB12A
Description
Bos taurus family with sequence similarity 125, member A (MVB12A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034283]
Coordinates
chr7:5611763-5612206:-
Coord C1 exon
chr7:5612145-5612206
Coord A exon
chr7:5611820-5612144
Coord C2 exon
chr7:5611763-5611819
Length
325 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACCTGCCCTTGCCTGCCAGGCC
3' ss Score
8.89
Exon sequences
Seq C1 exon
CCATGGATGGGGTTCCCTTCACGCTGCACCCCCGATTCGAGGGCAAGAGCTGTGGTCCCCTG
Seq A exon
GTGAGTCCAGGTCCTGGGGAGTCTGGGTCTGCCCCCACCCCTTGAGTTTTTAGGCACCACGATGCAGGATGTATCAGCGTGTGTATCCAGCACAGAGGGGAGTTCCTGGGTGGGAAGAGGCTGGAGGCCAAGGGGTGGGGGCGGGAGGGTCTCCTTCTGGAATGAGGGGTTCAGGAGGGGCAGCTGGATGCTTGGGGGCAAGAGGCAGTGGCAGGAAGGGGAGATGATGTTCAGGCAAATATTGAGGGGGCCCTTCATGAAGATGAGGGAACAAGGGTTCCAGGTTGGGGTCCCTGTCCCAGACTGACCTGCCCTTGCCTGCCAG
Seq C2 exon
GCCTTCTCTGCCTTTGCTGATCTGACCATCAAATCGCTGGCGGACATTGAGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003914:ENSBTAT00000005111:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.9=100)
A:
NA
C2:
PF102404=DUF2464=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]