RnoINT0095886 @ rn6
Intron Retention
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19977420-19978089:+
Coord C1 exon
chr16:19977420-19977481
Coord A exon
chr16:19977482-19978032
Coord C2 exon
chr16:19978033-19978089
Length
551 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
ACTCTCATTCTGTCCCTTAGAAC
3' ss Score
8.8
Exon sequences
Seq C1 exon
CCATGGATGGGGTTCCCTTTACCCTGCACCCGAGATTTGAGGGCAAGAGCTGCGGACCCTTG
Seq A exon
GTGAGTCCTCAGTGTAAGGGGATCTGGGCCACTGCTGAAGGGGCTGCAACATTCCTGCTTCCCTATGACTGGGCATATGGACATGGGCATGATGCGATCGGGAGATGGACAGAGGCCAAGGAGTCTTGGAGTAGGATGTGGGAGGTGGGGTAAGAGTCTTGGGCTAGTGTCTGTGGGGCCAGTCCTAAAAACTGGGAGCACTGGGGACAAGCATGATGGTGCTCAGAGGACATCCCAGTACTCCCATGAGTTTGAGGCCACATGAGACCCATCGGGGAAACTGGGGCATGCTTGAAGAGGTGGTCCAGCCAGTTAAGGCACTCGCCACCAAGCCTGACCTAATTTCAGTCCCTGGGTCCCACATAGCAAGAGGGACCAACTCCTGGGAGTGCTCTCTGTGGTATCATAGACAGACCTTGGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGAGAGTGTGAGCATATACATGGCACATGTGCACACACCACAGTTCAGTGGGACTCAGGCCGCTCACTCTCATTCTGTCCCTTAG
Seq C2 exon
AACTTGTCTGCCTTTGGGGACCTGACGATTAAATCACTGGCAGACATTGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949:ENSRNOT00000024413:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(7.9=100)
A:
NA
C2:
PF102404=DUF2464=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]