GgaINT0002706 @ galGal3
Intron Retention
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30294398-30294598:-
Coord C1 exon
chrUn_random:30294534-30294598
Coord A exon
chrUn_random:30294449-30294533
Coord C2 exon
chrUn_random:30294398-30294448
Length
85 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TAAAACCCATTTAATTTCAGGCC
3' ss Score
6.48
Exon sequences
Seq C1 exon
CGATGGATGGAGTCCCTTTCACACTACACCCCAAATTCGAGCGCAGTCCCAAATCCGACAGCAGT
Seq A exon
GTGAGTGTCCCTTCAAGCTGCAGCCACGCTTTTGTTCCCCATCCCACCTCAGAGCTGCTCTTCACTAAAACCCATTTAATTTCAG
Seq C2 exon
GCCATCCTCACTGACCTGACTGTCAAATCGCTCGCTGACATTGAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433:ENSGALT00000029792:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(8.5=100)
A:
NA
C2:
PF102404=DUF2464=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGAGTCCCTTTCACACT
R:
TCTTTCTCAATGTCAGCGAGCG
Band lengths:
111-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]