BtaINT0097061 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30128019-30128377:-
Coord C1 exon
chr19:30128259-30128377
Coord A exon
chr19:30128169-30128258
Coord C2 exon
chr19:30128019-30128168
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCATTACTTTGTCCATGAAGGTA
3' ss Score
6.76
Exon sequences
Seq C1 exon
TTGCTGACAAGGCTGCCTACCTCCAGGGTCTGAACTCTGCTGACCTGCTCAAAGCCCTCTGCTACCCCAGGGTCAAGGTTGGCAATGAGTTTGTCACCAAAGGCCAGACTGTAGAGCAG
Seq A exon
GTAAGTGCCCAACCTCTGTGAATCACATCCTTCCCAGGCCTTCACATCATGCCTTTATTAATGGCAATGATCATTACTTTGTCCATGAAG
Seq C2 exon
GTATATAACGCAGTGGGTGCTCTTGCCAAAGCCGTCTATGATAAGATGTTCCTGTGGATGGTTGCCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATCGGGGTCTTGGACATTGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAAGGTTGGCAATGAGT
R:
TGTCCAAGACCCCGATGAAGT
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development