GgaINT0127779 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:450180-450541:-
Coord C1 exon
chr18:450423-450541
Coord A exon
chr18:450330-450422
Coord C2 exon
chr18:450180-450329
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGCATTCTTCTCTGCTCTAGGTG
3' ss Score
11.53
Exon sequences
Seq C1 exon
TTGCTGACAAGGCTGCCTACCTGATGGGTCTGAACTCAGCAGACCTGCTCAAGGCCCTGTGCTATCCTCGTGTCAAGGTTGGAAATGAGTATGTGACCAAGGGTCAAACAGTGCAGCAG
Seq A exon
GTAGGAAACAGCTCATGACTGGCAACCTCTGGCTTAATGTACTGTCTTGCTCTGGGTGCTATTCTGCTCCTGCTGCATTCTTCTCTGCTCTAG
Seq C2 exon
GTGCACAATGCTGTAGGTGCTCTGGCAAAGGCTGTCTATGAGAAGATGTTCTTGTGGATGGTTGTTCGCATCAACCAGCAGCTGGATACCAAGCAGCCCAGGCAGTACTTCATTGGTGTCCTGGACATCGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGGGTCAAACAGTGCAG
R:
ATCTCAAAGCCAGCGATGTCC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]