HsaINT0107423 @ hg19
Intron Retention
Gene
ENSG00000109061 | MYH1
Description
myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567]
Coordinates
chr17:10415156-10415509:-
Coord C1 exon
chr17:10415391-10415509
Coord A exon
chr17:10415306-10415390
Coord C2 exon
chr17:10415156-10415305
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AACAAACTTTATCTGTGAAGGTG
3' ss Score
4.99
Exon sequences
Seq C1 exon
TTGCTGACAAGGCAGCCTATCTCCAAAATCTGAACTCTGCAGATCTGCTCAAAGCCCTCTGCTACCCTAGGGTCAAGGTCGGCAATGAGTATGTCACCAAAGGTCAAACTGTGCAGCAG
Seq A exon
GTAAGTGCATGACCTCAATGAATCACACACATCCCAGGCCTTCATGACATGTCTTTAATAACACCAACAAACTTTATCTGTGAAG
Seq C2 exon
GTGTACAATGCAGTGGGTGCTCTGGCCAAAGCTGTCTACGATAAGATGTTCTTGTGGATGGTCACCCGCATCAACCAGCAGCTGGACACCAAGCAGCCCAGGCAGTACTTCATTGGGGTCTTGGACATTGCTGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109061-MYH1:NM_005963:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGTCAAGGTCGGCAATGA
R:
CCAATGAAGTACTGCCTGGGC
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)