BtaINT0097086 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28708549-28708954:-
Coord C1 exon
chr19:28708761-28708954
Coord A exon
chr19:28708671-28708760
Coord C2 exon
chr19:28708549-28708670
Length
90 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
ACTGTCGTCTGCTTGATTAGGCT
3' ss Score
6.23
Exon sequences
Seq C1 exon
TGGACCGGATCGTGGGTCTGGATCAGGTCACGGGGATGACGGAGACGGCATTCGGCTCCGCCTATAAAACCAAGAAGGGCATGTTCCGCACTGTCGGGCAGCTCTACAAAGAATCGCTCACCAAGCTGATGGCGACGCTCCGGAACACCAACCCGAACTTCGTGCGCTGCATCATCCCAAATCACGAGAAGCGG
Seq A exon
GTATGTGTTTCAGAGCAGGTGCTGCCACTGGAGACGGATCTGGGCCAGCTCACAGAGATGAGGCTCTGAAACTGTCGTCTGCTTGATTAG
Seq C2 exon
GCTGGGAAACTGGACCCACACCTGGTGCTGGATCAGCTCCGCTGCAATGGCGTCCTGGAAGGGATCCGCATCTGCCGCCAGGGCTTCCCCAACCGGATCGTTTTCCAGGAATTCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGGGCAGCTCTACAAAG
R:
GATCCCTTCCAGGACGCCATT
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development