DreINT0099726 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7466791-7467188:+
Coord C1 exon
chr6:7466791-7466984
Coord A exon
chr6:7466985-7467066
Coord C2 exon
chr6:7467067-7467188
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AATCTCTGTTCTTCTGTTAGGCT
3' ss Score
7.34
Exon sequences
Seq C1 exon
TGGACCGTATTGTTGGTTTGGACCAAGTGGCAGGAATGAATGAGACTGCATTTGGAGCCGCATATAAGACCAAAAAGGGCATGTTTCGCACTGTGGGTCAACTATATAAAGAGTCCCTTACAAAACTCATGGCCACACTCCGAAACACCAACCCCAACTTTGTTCGCTGTATAATCCCCAATCATGAGAAGAGA
Seq A exon
GTAAGTGACATTAGTGCCTTTAGTCTGAAGTAAATCTGAGTAAAAATACAGCCCATTGTCATAATCTCTGTTCTTCTGTTAG
Seq C2 exon
GCTGGTAAGCTGGAGCCCCATCTGGTTCTAGATCAGCTGAGGTGTAATGGAGTTCTTGAAGGGATCCGCATCTGCAGGCAGGGATTCCCTAACCGCATCGTCTTCCAGGAGTTCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTCATGGCCACACTCCG
R:
GACGATGCGGTTAGGGAATCC
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]