GgaINT0127247 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1710955-1711637:-
Coord C1 exon
chr18:1711444-1711637
Coord A exon
chr18:1711077-1711443
Coord C2 exon
chr18:1710955-1711076
Length
367 bp
Sequences
Splice sites
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
3' ss Seq
TGTTTGTTTTGTTTATCCAGGCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
TGGATCGTATCGTGGGTCTGGATCAGGTCACTGGAATAACAGAGACTGCTTTTGGCTCTGCATACAAGACCAAGAAGGGCATGTTTCGTACTGTTGGGCAGCTGTACAAAGAATCTCTCACCAAGCTGATGGCAACGCTCCGAAACACCAATCCCAATTTTGTTCGCTGCATCATTCCAAATCACGAGAAGAGG
Seq A exon
GTTTGTGCTCCAGTCCACTCCTGGAATTCTTTTTCCTTATTAGCGTTGGATTTATTTAGTGCTGTCCATGTCTTCCCTTTGAAATCAGAAGCCAGGCTTCTGATTTGAAAAACTTTCACACTCACCAGATACGCTTTGGGCAATTTGACCAAGTGGGAGATGTCCCATCCTTGCCCAATGGCAAGGAAGTTGGAATGAAATGGTCTTTAAGGTCCTTTCCAACCCTATCTCCATGGTTCTATGAAGAAATATCTTCTCAGTATTCCAAATACATCCCTTGTTTAAATAGTTGGCTGAAAAATTTAAACTGCAGTTTTTCATGAATACAAATTAAAGTGTAAAAATAATGTTTGTTTTGTTTATCCAG
Seq C2 exon
GCTGGAAAATTAGATCCACACCTTGTTCTAGATCAGCTTCGTTGCAATGGTGTTTTGGAAGGAATAAGGATTTGTCGACAAGGATTTCCAAACAGGATAGTGTTCCAGGAATTCAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGTATCGTGGGTCTGGA
R:
TGCCTGAATTCCTGGAACACT
Band lengths:
312-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]