BtaINT0097222 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53637169-53642612:-
Coord C1 exon
chr1:53642494-53642612
Coord A exon
chr1:53637319-53642493
Coord C2 exon
chr1:53637169-53637318
Length
5175 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACTTTTGATGTGGTTTTCAGGTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATGCTGGCAAGGCTGCTTTCCTCATGGGCATTAACTCCTCTGAGCTGGTGAAGGGCTTGATCCATCCTAGAATCAAAGTTGGTAATGAATATGTTACTAGAAGTCAAAATGTAGAACAG
Seq A exon
GTAAGTTACTTCCAGAGTATTATGATTCTATCCTCTTGTACTAATTGTACACAGGTTTTATTTGTGTATTTTTCAACTTCTGATGTCTGTAACAAGGGCTTCTATAAAAAAGTGAAAAAGAATTACCATGATGAGTATTCTGTTTTCATCTGTGATGCACACTACAGTAAATGCTCTTGTGTTAAGAGTCTTTCTTTTTTTTATTTTATTTTTTAACTTTACAATATTGTATTGGTTTTGCCATATATCAAAATGAATCTTTCTAGTCTGAAAGATACCATTTTGACAGTTTCCCCTTAAGCAACAAGTCTCTTCAGATTCAGGGAAGTCCTTTACATTTTATAATAAACATCTTTGTGGTCTAGCTAAGAGGCTCTTAAAAATACAGTTTCTGACATGAATAAAATTGGTAAATTGAAATCTATTCACCTATTTGGAATATTAACTTTTTAGGCTATCAGATGCATTCATTAAGAAAGGGTTTCAGCACATATGCTGAAGTTAGCATTCAAAGAGGGGGAAAAATGAGAACCAAAGTGAGAGATGGAAGGTCATATAGGTTTGTTTTGTTCAGTATCCAGGAGAATATTTTAATGATAGAATAATGAGTGCTCTAAGAAGTGTTGATCCTGAGGCTGTGCAGTAAATAGTCACAGGACAGCCAACTAGTGGGACCATCTAAATATGATAGTGTATTTCAAAATAATAATTGACATCTGCAACGTGCCAGTATGAGACAAGCCCTGCTACAGTAACATACACATTAAAATCCTAGTGACAATAAAATGGGCATTTATTTCTTACTCACACCAAGCCCAATACAGATTAGACCGCCTTCTTCAATTTTGTCCTCAGGCCATCTGGAACGCATGGCCTCCAGTGTTGCTGCACAGGGAAAAAATGATTTGTGAAGAAAGCACACACACTTTAACTGCCTGGGGCTAGAAGTGATATCACGTTTAGTAAGATTCTATTGGTGAAAACTAGTCAAATTCTCTCCTTAGCTACTGTGGGGCTGAGAAGTGTAGTCTTTCTGGAAAGAGAAAGTGGTTTGATCACATATAACATGTAAAAAGCATTCATATTATCTCCTTCCATTCCTACAACAAAACTCAGAGGTATAAGTATCCTTACCCGCAAGGATACTTATGTATTTTCCAGTTGAGGAAACCGAGGGTTAGGGAACATAAGTAACATTCCAAAGGACACCCAGATAGTATTCAGGTGACACTTAGACTGTCTTATTCTGTATACATCCCAAATCTGAAAATGAGATAGACAAATGTGCAACTTTGTGACAGAAGACAGTTATTTTGACAACAATAAACTCTCTTCCTTTTGATATGTTTATAGAAAGACATTTGGTGTGACTGTCATTTAAAACATTTCAACAACTAATCAAAACCAATTTCCTAGTTCAGCTTACTCTGTAACTAAATAAGCTTATCTCTACCATAATATCAACTCTATGGGAACAATTTGCCTGCATTTTTGTCCTCCCTGGTGACCTGAGCTCTTGAGGCCATGGACTGTGTCTAATTCATCTTAGTACCCCAGCGTCTAGCACGGTGCCCTGCAAGCGGTAGGTTCTCCATAGATGTTAAAATAAATGAAATATTGACTGACATTAAGCCATGCTCAGTGGGACAAGTAGTTGAGCTATTTCTTCATAGTGAGGCTGGAGATGTCTGGCAGCTTCTTGCCTTTTAAGACATTCACCACCACATGCATGCATGACATGCTATGATTATAGAACAAGGACTTGCTCAGTGTAAAACTAATGAGCCCATAGGAGGACTGAAATCAAACCTTCATCTCTTTAATATTGTGTTCTCGGGGACTGAGTTACCACACCAGCCTCTACTATAATGGAATCAGTGAAGCGAGCTAATATATTATTATTCAACATTAAAAGAAAGAAAACCCTCATCCTCCATGCCCCCCTCCCCTACCCACCTTCTTGCTTAAGCACTCTCTTTTCCTCCATCTCCTGAAGACAGAGTAAGAAAGCACACTGTAAGGCTTTTCTTTTCTTAGGAATTTTACCGACTTTATAGAGACAATTGTCACTGCTAAGAATAGAGATGTATATGCTCTGTTGATGACTATTGCAAAAGATGGCAAAAATTCTTGCAGTGTTAACACTTTATACAAAACTTAGTTCTAGTTCTTATGCTATCTAATTCTGCCTCTTTGGTCAAATACTCCATCTCTCTGAGCACCCCATGAAGAGGTTAAATTCTTCTGTGGGTCTTGGTGGAACAATGATTGGCATCTAAAGGAGATAATTCTTCATGTATGAGAGTGTCCCACACATTGAAGGAGGTTTTGCATTCCTGCTCCCAGGTGCTAAATGCCAGCAACACTCTCAGTCACTGATCATGGGAAAATGCCCATCCTGTTCCAAAGTGCCCCCTTCCCTTGAGTGGAGCGTGTACCATCTTGAATTGGGAGCCACTATACATGATTATCCAGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAAATCCCATGGACAGAGGAGCCTGGTGGGCGCAGTCCATTGGATCGCTAAGAGTCGGACACGACTGAGTGATTTTACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGTAACCCACTCCAGTGTTCTTGCCTGGAGAATCCTAGGGACGGGGGAGCCTGGTAGGCTGTCGTCTGTGGGGTCACACAGAGTTGGACATGACTAAAGCGACTTAGCAGCAGCAGCATACGTGATTACCAGGAACCAAGGCTCTTTAGGTCTAGTATTTTAAAATTCTAGGAGAGTTCTAACTATGCTTATTAGAAATAAGTTATTTTACTTTAAAAAGATTAATAATGATCAAACAATAATAATAATCAGTAGTTTTTCAATGCTCAGTGTGGATGCTGTGTTATGTGCTTTGTATGCATAGTTCATTCAATCAAACAGCAAGTCTGCAAAGTTGATCTTATTTATGCTTCCAATTTATTAAAAACAGTGAACTTAGATTAACTGCTGAAAGCAACATGGATAGTAAAGACTGGATCAAGGATGAGGAAGTGATAAAAGTGGAGAAGGGATAGGAAAGGGGGAACTAGCATTTATTAGGTTGACTCTAAGTGCCAAATACTGTGCTATGTATACTTGCATCTTCTGTCTCATTAAATCTCTTCCAACAACCATGAGACAAGCATATTTTAATATTATTTTGCAGATGAGGAAGGCAGGGATCAAGGTGGTTAAAAATACAGCTATTTGACTCCACTTCTTTTCAGTTTTGTTTTTTCTATCCTATACTATTGACCCCCAAGTAATCAAAGTCTTTGAGGTTATTTTATTTTATTTTTTAAAATTTAAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGAATCTGCCATGGGTATACACGTGCTCCCCATCCTGAACCCCCCCTCCCACCTCCCTCCTCGTACCATCCCTCTGGGTCATCCCAGTGCACCAGCTCCAAGCATCCTGTATCCTGCATTGAACCTGGACTGGCGATTCATTTATCATATGATATTATACATGTTTCAATGCCATTATCCCAAGTCATCCCCCCTCTCCATCTCCCACAGAATCCAAAAGACTGTTCTATACATCTGTGTCTCTTTTGCTGTCTTGCATACAGGGTTATCCTTACCATCTTTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATGAGGTTATTTAAAAAAGAGCTCAGTCGTGAATCTGTTTAACCTCTGCTACAATTTCAGGCTTTCTTCCTGTTTTTCACTACTCCCCAGCTGCGGCCAGTTTCTCTCTCACTCCCACTTCTCAAGTATTTAGGGAATTAATAGGTGGGGAACAAGTTAGTCACGTTCTTTTTAAACTTTCAAAGTGACTGCTGTAGACAGAGAGTGATTTCCTCGATGCTCTGGAGGATAAAAATCATTCTCGGTGCTTTACTTGTGCGTGTGTGCTCTTGATGCCAATAATAAAAAACTGTAATGCCATCCGGCTTACGGATTACTGTGGAAATGACTCAAGATAACTGATCAGGGAGTGGGTGACTCATAACTAAATCACCGCCAGACACCAACTGGCTCCTGCTGTGCGCACTGTCCTGGGCAGCCGAAGGATGGATGTGATAGGCCTATTTTAAATGTTAAGTCGTTGGAGCGCATTCCCCTGCCAGGCTTGGAGACTGTCCAGCTGAAATTCACTCCTCCTTGGAGTCTGTCAGAAAGCTGCTGCGACAGCGGCGCCTGCGAGTCACGGCAGCAGGATCTACATCCGCAAAACAGCAGCATCACGCGCAGAGGTTGGAGCTCTCCCCAGTAGGTTAGGAGAGCGCCTTTGACCCACACCTCCAGGGAGGGGAAATGTAGCCTCAGTTTTATAGTACAGGAATCTGAGTCAGAACAATGCACTAAATTGCCATTCTCCCTATGCAGAGTTGAGGGCAGCCCTGGGAACTAATAAAATAGGTGGAAGCTGAGGCTGGAAAGAATCTTCAAGAGCATAACTCAGGGGAAGACACTGTACCCTAGAGAGACTGGGACACTTGCCAAAAGTTATGCAATTTATTAGCAGCAGCAGGAAAGGGCTAGGAGATTCCATATTCCTAACCTACTCTACCAGCATTTTTGAAACTTTATGGTGTGTGGGAGTCAGAGGGGATTGTGCCAGAGTGCAAATTCTGATTCATTGGTCTGGGAAGAGATGCTGGGCATTGGCATCTTTAAAAAGCTCTCAGGTGATGCCGATGCTGCAGGTCTTAGGACCACACTCTGAACAGCAAGGTTTTAGAACATGTTGCCACCCTACCCCAGGAGGTTTGGTCCTTTAGTGGTAGGAACATGAATCTCTCACAGGAGTGTCAGGTGGGGAGGCACCAGGCAGCTCACCTCCTTTCCAGTAACTCTCCTCCCTTCTCCTCCCTCCCTTCCTTCTCGCTTTACTCCTGTCCTTGCTTCTTTCTTCCTTTCTCCTTATCTTCAGCGTAAAGCTATAACCACAGAAAGCAGATAAATGTATGCTGGTTTTAGAGAATACCCAGGATCAAAATGAACACTGTTGTCAGGCAAAGGACGACTTTTGATGTGGTTTTCAG
Seq C2 exon
GTGACCTATGCTGTTGGTGCCTTGTCTAAGTCAATCTATGAGAGAATGTTTAAGTGGCTGGTGGCACGTATCAACAGGGTCCTGGATGCCAAGCTGTCAAGACAATTCTTCATTGGCATTCTTGACATCACTGGTTTTGAGATGCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development