GgaINT0119182 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90806072-90807378:-
Coord C1 exon
chr1:90807260-90807378
Coord A exon
chr1:90806222-90807259
Coord C2 exon
chr1:90806072-90806221
Length
1038 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTTTGAAATCTGTATTTTAGGTT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GTGCCGACAAAGCTGCCTACCTAATGGGAATCAACTCCTCTGATTTGGTTAAGGGCTTATTACACCCTAGAGTGAAAGTTGGAAATGAGTATGTGACCAAAGGTCAAAGTGTTGAACAG
Seq A exon
GTAAGGAGAAACCATCATAGGATTTGGATACCCATTACAAAAGCCTTAAGGCTTCTGCAACATCTCAAAGATTGAAACAGCTTCTAGAAGCATTAGTATATACGTGTCACTTGAATTTTGGATCCTCCAGTGCCCGTTTTCATTCTACATCCTTTCACTTGGTGTAACAGATGGTGACAGAGCAGGAAATGGGTAAAGAGACTAACAAGGAAATAGTTCATCTGTTTACTAACAAAGACACTGCTTTTGATGGATTATTTTTTTGGTGCATTTGTAACAGCCACTTAAAGAAATGAGGTGCAGTAAAAGCATGTGGGAATTGGTATTTTATTCTGGATTGGAATAGTTACCTAGAAGAGCTGATCCATGGATTATTTACATATGCATTCATTATTCATGTAATTTTAAGCTCTGTGTGACCTCAATCAGCTAATGGTAATATCCACTTAAGTACCGTTTAATTTAGGAAACAAACAAAAGTCCTTGGGTTAGTACTGCTGCAGGCTATAGCAGTACTTTAGAGGATGATCCAGTATTTTGATTACAGCAAAAGTTGTCCAAAGATAGGCTAAGTGACAGGCACAGTTACTAGAGAGCCACTGGAGAGAGTAGGTGTAGATGTGTTTGCTGTAGACTAAAGAAGAGACATTGGCAGTTCCTTTTCATATCTCCTACCTTAGCATCCCTCCAAATTAGAAGCAAATGCCAATTAGTAACATAAGCACAGACCTCCCCTATGCCTGCAGTAGTTCTGGATATCATGGCTGCCATCAGGCCTACAAGCTTTTTTCGTGACAGTTAAAGAGATTAAACCATTTGCAACTTTCTGTCTCGTTCCCAAAAGGTATTTGCTAGCATTTTATGTACACATTTGTACATACATGACTGAAACGTGCATAACAGATAATGAGTGAAGCTGTACCATATTAAATACGCCTTGGCAGCTATAAAAAAAAAAAAAGTGATATTTGACTAAAATTCTTGTGTTCCACAGTGAACACTGTTGTGTGTGGTAGTATTTTGAAATCTGTATTTTAG
Seq C2 exon
GTTTTGTATGCTGTTGGGGCCTTATCCAAGGCAGTGTATGATCGAATGTTCAAGTGGCTGGTGGTCCGTATCAACAAAACACTGGACACTAAGCTGCCAAGACAGTTCTTCATTGGAGTCCTGGACATTGCTGGCTTTGAAATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAAAGCTGCCTACCTAA
R:
AAGATTTCAAAGCCAGCAATGTCC
Band lengths:
262-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]