RnoINT0096426 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54302063-54308001:-
Coord C1 exon
chr11:54307883-54308001
Coord A exon
chr11:54302213-54307882
Coord C2 exon
chr11:54302063-54302212
Length
5670 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AATTTACATATGATTTCTAGGTA
3' ss Score
5.58
Exon sequences
Seq C1 exon
ATGCTGACAAAGCTGCCTTACTCATGGGCATTAATGCTTCTGAGTTGTTGAAAGGTCTTATATATCCTAGAATCAAAGTTGGTAATGAATATGTTACCAGAAGTCAAAACATACAACAG
Seq A exon
GTAAGGTAATATTTGAGGTCATAGTAATTGTGTGAACATGTAATTACTTTACACACATCATATTTACATATTTTCAACAACTGACAATGTTAGCAATAACTTTGTAGTTATTGTACAGTAGTGAAAAAGGCTACTGTGGTGAGTATTTAAAATGTTCTTAAGAAAGATGTTATAGTGGTACATGACTATTCTGCATATTTGACAATTCTCCCTTAGGTAACATTTTACTTGTGATTTTTATCTTGGTTGTCCAGCTAAGAAACTTTCAGAGCTGTGGAGTATTTATGTGAATCATCTTGAAGCTGAAACACCTTTATATTTCCACTTTCTTAGTGTAATTGACATTTGGTTACATTAGTGGAGGAGAGGAATGTATGTATGTTGAAGATAGTTAGCATTTGAAAGAATAAGAAATTGAGAACAGACATGAAAGATAACAGTCTCTATTGATTTAGTTTGGTATAAATAGCAAATGTTCTGAAAATGGCTGACTTAAGGCTTTTCCTCATACAGTAAATATGTCCAGAGCTACTGAGTACTGAGGCAATTTAAGTATAGCAGCACAGTTTAATTTATGTATGATATATATATATATATATATATATATATATATATATATATATATATATACATGTGAGTGTGGTACAGACTATACTGCAGAAATGCATATATACCAAAATCTCAGTGGCAACAAATTTTTTTTCTTTTACCCAAACTAAATTTAGTACTTATTGTAAGAAATTATTGAATTGCATTCTTATGTTACTTTGGACCCACAGCCTATGAAGTTGTGAACAGGGGAAAACAAGTCATTTGTGGAGGGAAGGCCTCACACATCAACTTGGGCCAGTGGTGCTAGGACTTTCACTCATGTCCAATGAAGAGAATTTGTCAGATTGTCTCCTCACTGTAAGAGAGGTGATGAATGCGATTGTTCTAGAAAGAGGAAATGGTACAGTGAAGTTATAACCTAGTCTCTGTCACCCATAACACCCACATATACACACATGTACACATACACACATACACACACATACACATGCACTTACACTTACACACATGCATACACACATTCTCACACACATAATACGTGGACATACACATACACATATACACATACTTGCACATACATATATACACTCACACACATTTGCTCACATACATTTACACACACACATGTGCATGCATATACACATACACCACCCCCAGTATTAGACATTGGTGACACTGAAGAGGCACTCAGGTGGCAGAGGCTTGGGAATCATAATTCAAGATCATCTTCTGATGAATTAGTTTAAGGCTATTCAGGGCCATGTGAAATTATCTCAACTCTTCTTTCTCCTAATGCAAAGAAGCAAAAACCAATAATGAAATCTCACTAAACATAGTTGATAGACTGGATGTGTGAAGACCATAGCAGGCATGAACATCANNNNNNNNNNNNNNNNNNNNCTGAGAAATTAGAACAGTGGCAGAGTTTACAAGGGGTAAGGGAAATGTCTCATCTATTTTACACTACCAATGCCTTCTTTAAACTTAAGTCTAGTAGTGAAAATGATAGTGTTGTAACTCTGTTTACCATACATCTGGAGATGTGCCTCAGTAGTAGAATTTGCCTAGCATAGATTTAATTGTCAATGCAACACACACACACACACACACACACACACACACACAAAGAGAGAGACAGAGAGAGACAGACAGAAACAGAGACAGAGAAAAAGACAGAGAGACAGAGAGAGACAGAGACAGACAGACAGATAGACACAGACACAGACACAGAGAGACACAGAGACATTTAAAGTAACCTTGGTGACCTTTAAGGCCATAGATTATGGCCAACATTTAGCATAGTGCTCTATAAACGGTAGATGCTCTATAAATGTGAAGATAATTAACTTAGGTGGAAGTTGAGTCATATGATCAAAAGTATTTGAGCTACTTCCTAGTGTTAGACATGTTTGTCAGTGTCATTGTTTCCTAGACATCTACTATAACATGGATGTGTGATATGCAGTGACAATTGATTAGGGTCTTTCTGTTTACATAACCAAAGAGCCTGTATGAAGACTGTAACACCTGCCTCTTAAAAATAATGTGCTACAGAGGATTGATTTGAACTCCAGGTTTTCCTCTAATAGAACTAGTTAATAAAACTAGTATGTTATTTTTCAAAATTAAAGAAACAAACTGCCTCATCGTCTTGGGGACAGTTAAAGAGAATTGTCTTAGCCTCATCATGATAGGAAAATCTGTTACATGATGATTGTCCCATGAGGTCAACCTTGATTCAGGAAGGTGAGAATCAAACTGAGAATGAAAATAATAAAGAGTTGGAAGTCAAAATTAGTCAGAGTCTCCAAGAGCACTATTGGGATGGAACTTCTGGGAAGGTAGGTGAGTTGCTGATGGTTACTCATTTTATCAATCAGCTGTATCGGCAATAGTCAAGCATGTCCTAGGGATTATAGATTTTAACATTAAATATTAACACTTTAAAAACTTTACTTGACACAGTTCATTAAAAGAAATCGCCTAATATTTTTTTCGATAATGAGAGAGACTTTATTTAAGACTACTGTAATAGAGATGTTGCAACAGGGAGGTGACTTTGGACTTAACTCCTAATACAGCCATGGCAAGTAGGAATTTATAGGTCAAGAAAGGGGAAAGAGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGAAAGGGGAAAGAGGGTGAATGAAAGCACATTTCTAAGCGAAGACATCATGGAAAAGGGACCATGGTTGACTGAAATAACAGACCTCTTGCTAAGGACAGGCTACAAATTTATACATGACATGAGGAATAAAACATATCATCAAGTATTAAGGGCAGAAAAGTCTTCATTAAATGATAGAAAAGCATGTTCTAGTAACTAGCTGGAGTGAATGTGGGAATAGTGCATTTCAGAGTCAGTACGTTTGGGGCTGTGTTTGAATCCTGCTATCTTTTTTTTTTTTTTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCAAGTGTTATTCCCTTTCCCGGTCTCCGGGCAAAATCCCCCTCTCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCAACCCCCTCCCCCATTGCCGCCCTTCCCCCATAGTCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGGGGTCAGAGTCCAGGGTCAGTCCATATATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGACATTGTTGTACTTTTGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGACCTATTCTCAGCTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGCGATCTACATCCGGCTCCTGTCGGTCTGCACTTCTTTGCTTCATCCATCTTGTCCAATTGGGTGGCTGTATATGTATGGGCCACCTGTGGGGCAGGCTCTGAATGGGTGTTCCTTCAGTCTCTGTTTTAATCTTTGCCTCTCCCTTCCCAGCCAAGGGTATTCTTTTTCCTCATTTAAAGAAGGAGTGAAGCATTCACATTTTGATCATCCGTCTTGAGTTTCGTTTGTTCTAGGGATCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGTATGTCTTTCTGTGATTGGGTTAGCTCACTCAGGATGATATTTTCCAGTTCCAACCATTTGCCTACGAATTTCATAGACTCGTTGTTTTTGATAGCTGAGTAATATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTCGGTTCTTTCCATTTTCTGGCTATTATAAATAAGGCTGCAATGAACATAGTGGAGCACGTGTCTCTTTTATATGTTGAGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGATCCTCAGGCAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTTTACCAGTCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGTTTCTCAGCCATTCGGCATTCCTCAGCTGTGAATTCTTTGTTTAGCTCTGAACCCCATTTTTTAATAGGGTTATTTGTTTCCCTGCGGTCTAACTTCTTGAGTTCTTTGTATATTTTGGATATAAGGCCTCTATCTGTTGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCAGTTTTGTCCTAACCACCGTGTCCTTTGCCTTATTACCACCGTGTCCTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGATCCCATTTGTCGATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTTCAGGAAATTTTTTCCAGTGCCCATGTGTTCCAGATGCTTCCCTAGTTTTTCTTCTATTAGTTTGAGTGTGTCTGGTTTGATGTGGAGGTCCTTGATCCACTTGGACTTAAGCTTTGTACAGAGTGATAAGCATGGATCGATCTGCATTCTTCTACATGTTGCCCTCCAGTTGAACCAGCACCATTTGCTGAAAATGCTATCTTTTTTCCATTGGATGGTTTTGGCTCCTTTGTCAAAAATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTATCTGTCTGTCTCTGTACCAATACCATGCAGTTTTTATCACTATTGCTCTGTAATACTGCTTGAGTTCAGGGATAGTGATTCCCCCTGAAGTCCTCTTATTGTTGAGGATAGCTTTAGCTATCCTGGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGTTCTGTCTAACTCTTTGAAGAATTGGATTGGTATTTTGATGGGGATTGCTATCTTTTTTTCTAATTATTTGCTCCAGATGCTCCCGCTGTTGATAGCAGGTCTTAAGACCACACCGTTCAAACCAGGCTCTGGCATATACCATCATAACATACCTGGGTATATTTAGTTTATTGTTAATAAAAACATCATTTATCTCATCTGTACATTTGAAAAGGAGGCACAGTGTTAACTTTTTTTAAATCTCCTCCTTCCTCCAACCCATTCTTGCTTTTCTTCTCCTTTTCTCCTTATATTCACCAGAATTCTGTGACCATAGAAGATTAACAAATCAAACATTGTTGAAAGAAGATGCTAAAGATTTACTTTTATAATTATGTGTATGAATCTGTATGTGGGGGTAAGCATGTGAGACTAGAAGAAAAAATTTGATCCTCTGGAACTGGAATTACAAGCAGTCGTGAGCTGCCTGGGTGTAGCAAGCAGTCTTATACCACTGAACCATCTCTCCACACCCCTTTACAAATATTTATTTTTATAATTTTTGAGGAAAAAATTTACATATGATTTCTAG
Seq C2 exon
GTAACCTATGCAGTTGGTGCACTCTCTAAGTCAATATATGAGAGGATGTTTAAGTGGCTAGTGGCACGCATGAACCAGGTCCTGGATGCCAAGGTGACAAGCCACTTCTTCATTGGTATTCTTGACATCACTGGTTTTGAAATACTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]