DreINT0099876 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24968776-24969292:-
Coord C1 exon
chr11:24969174-24969292
Coord A exon
chr11:24968926-24969173
Coord C2 exon
chr11:24968776-24968925
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACATTGTGTGGCTCCACCAGGTT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTGCTGATAAGGCTTCCTACCTGATGGGCGTTAGCTCAGCAGACCTTATAAAAGGTCTTCTGCACCCTAGAGTGAAGGTGGGCAATGAGTATGTGGTTAAAGGACAGAATGTGGAACAG
Seq A exon
GTGAGAAGTGCTCCCCAAATCCTTCCTCTTTGAATATGTGTCTGTAGCTACAAAGTCAAACAAAGGGTCTTGGGAGAATTCTGCTATGCCAATAATAATGCATGCTGAATCCACTGACATTTACTGTTGATCTGCTAAGGAATAAAGTAGCCTGAGAAATCAGCCTGGTATCCAGGCAACTGTTGCAATGCATGTGAGTGACAGCTGTGGTCTTCATGTGCTCCCCACACATTGTGTGGCTCCACCAG
Seq C2 exon
GTTAACTATGCTGTTGGAGCTCTGGCCAAAGCCACTTACGACCGCATGTTCAAGTGGTTGGTGGGGCGTATAAATAGGACGCTCTACACTGCTCTGCCACGCCAGTTCTTTATCGGAGTGCTGGACATCGCCGGCTTTGAGATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGATAAGGCTTCCTACCTG
R:
TCAAAGATCTCAAAGCCGGCG
Band lengths:
268-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]