HsaINT0107883 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33575360-33575717:+
Coord C1 exon
chr20:33575360-33575478
Coord A exon
chr20:33575479-33575567
Coord C2 exon
chr20:33575568-33575717
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCCTCCCTGCACCTCCAGGTG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGCTGACAAGGCTGCCTACCTGATGGGGGTCAGCAGTGGGGACCTCCTCAAAGGCCTTTTGCACCCCCGGGTGCGTGTAGGGAACGAGTACGTGACCAAGGGCCAGAGTGTGGAGCAG
Seq A exon
GTGAGCTGCCTGCAGGCCAAACCCATGGGGGACAGCCGGGCAGGGTCCCCTCCTTGCCAGGTCCCAGCCCAGCCTCCCTGCACCTCCAG
Seq C2 exon
GTGGTGTTTGCTGTGGGGGCTCTGGCCAAGGCCACCTATGACCGGCTGTTCAGGTGGCTGGTGTCTCGGATCAACCAGACCCTGGACACAAAGCTGCCCCGGCAGTTCTTCATCGGGGTTCTGGACATCGCTGGGTTTGAGATCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAAGGCCTTTTGCA
R:
CAGCTTTGTGTCCAGGGTCTG
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)